Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene ID	`LXL04_010397`
Query reference	OH1004
Location	Chr02:146034009-146035809 (+)
Description	Similar to RUG3: RCC1 domain-containing protein RUG3%2C mitochondrial (Arabidopsis thaliana OX%3D3702)
Annotation source assembly	GCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_010397 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 27 GO annotations and 2 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g60870`	Regulates DNA damage response (DDR) synergistically with ATM.	The RCC1 family protein RUG3 is required for splicing of nad2 and complex I biogenesis in mitochondria of Arabidopsis thaliana.2011 · DOI: 10.1111/j.1365-313x.2011.04658.x RUG3 and ATM synergistically regulate the alternative splicing of mitochondrial nad2 and the DNA damage response in Arabidopsis thaliana.2017 · DOI: 10.1038/srep43897 RUG3 is a negative regulator of plant responses to ABA in Arabidopsis thaliana.2017 · DOI: 10.1080/15592324.2017.1333217
`At5g63860`	UV-B specific signaling component that acts as a UV-B photoreceptor and plays a key role in establishing UV-protective responses in plants.	A UV-B-specific signaling component orchestrates plant UV protection.2005 · DOI: 10.1073/pnas.0507187102 UV-B promotes rapid nuclear translocation of the Arabidopsis UV-B specific signaling component UVR8 and activates its function in the nucleus.2007 · DOI: 10.1105/tpc.107.053330 UV-B signaling pathways with different fluence-rate response profiles are distinguished in mature Arabidopsis leaf tissue by requirement for UVR8, HY5, and HYH.2008 · DOI: 10.1104/pp.107.108456 Interaction of COP1 and UVR8 regulates UV-B-induced photomorphogenesis and stress acclimation in Arabidopsis.2009 · DOI: 10.1038/emboj.2009.4 UVR8 in Arabidopsis thaliana regulates multiple aspects of cellular differentiation during leaf development in response to ultraviolet B radiation.2009 · DOI: 10.1111/j.1469-8137.2009.02855.x Negative feedback regulation of UV-B-induced photomorphogenesis and stress acclimation in Arabidopsis.2010 · DOI: 10.1073/pnas.0914532107 Functional interaction of the circadian clock and UV RESISTANCE LOCUS 8-controlled UV-B signaling pathways in Arabidopsis thaliana.2011 · DOI: 10.1111/j.1365-313x.2011.04573.x Perception of UV-B by the Arabidopsis UVR8 protein.2011 · DOI: 10.1126/science.1200660 UVR8 mediates UV-B-induced Arabidopsis defense responses against Botrytis cinerea by controlling sinapate accumulation.2012 · DOI: 10.1093/mp/sss025 C-terminal region of the UV-B photoreceptor UVR8 initiates signaling through interaction with the COP1 protein.2012 · DOI: 10.1073/pnas.1210898109 In vivo function of tryptophans in the Arabidopsis UV-B photoreceptor UVR8.2012 · DOI: 10.1105/tpc.112.101451 The UV-B photoreceptor UVR8 promotes photosynthetic efficiency in Arabidopsis thaliana exposed to elevated levels of UV-B.2012 · DOI: 10.1007/s11120-012-9785-y

Rice

No hit for this species in the current source table.

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

Type	ID	Name	Namespace	Evidence	Source
GO	GO:0006281	DNA repair	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=36.823; coverage=63.678; evalue=9.65e-46; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0006397	mRNA processing	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=62.85; coverage=98.391; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0006886	intracellular protein transport	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=36.823; coverage=63.678; evalue=9.65e-46; UniProt GO evidence=NAS:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0006974	DNA damage response	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=62.85; coverage=98.391; evalue=0.0; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0008380	RNA splicing	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=62.85; coverage=98.391; evalue=0.0; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009738	abscisic acid-activated signaling pathway	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=62.85; coverage=98.391; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009788	negative regulation of abscisic acid-activated signaling pathway	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=62.85; coverage=98.391; evalue=0.0; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010228	vegetative to reproductive phase transition of meristem	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=62.85; coverage=98.391; evalue=0.0; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0016567	protein ubiquitination	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=36.823; coverage=63.678; evalue=9.65e-46; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0032981	mitochondrial respiratory chain complex I assembly	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=62.85; coverage=98.391; evalue=0.0; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0043161	proteasome-mediated ubiquitin-dependent protein catabolic process	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=36.823; coverage=63.678; evalue=9.65e-46; UniProt GO evidence=IEA:Ensembl	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0050821	protein stabilization	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=36.823; coverage=63.678; evalue=9.65e-46; UniProt GO evidence=EXP:DisProt	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0072702	response to methyl methanesulfonate	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=62.85; coverage=98.391; evalue=0.0; UniProt GO evidence=IEP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005634	nucleus	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=36.823; coverage=63.678; evalue=9.65e-46; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005654	nucleoplasm	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=36.823; coverage=63.678; evalue=9.65e-46; UniProt GO evidence=TAS:Reactome	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005737	cytoplasm	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=62.85; coverage=98.391; evalue=0.0; UniProt GO evidence=ISM:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005739	mitochondrion	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=62.85; coverage=98.391; evalue=0.0; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005794	Golgi apparatus	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=62.85; coverage=98.391; evalue=0.0; UniProt GO evidence=ISM:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005814	centriole	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=36.823; coverage=63.678; evalue=9.65e-46; UniProt GO evidence=IEA:UniProtKB-SubCell	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005829	cytosol	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=36.823; coverage=63.678; evalue=9.65e-46; UniProt GO evidence=IDA:HPA	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009507	chloroplast	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=62.85; coverage=98.391; evalue=0.0; UniProt GO evidence=ISM:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0016020	membrane	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=36.823; coverage=63.678; evalue=9.65e-46; UniProt GO evidence=HDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005085	guanyl-nucleotide exchange factor activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=36.823; coverage=63.678; evalue=9.65e-46; UniProt GO evidence=NAS:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0008270	zinc ion binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=36.823; coverage=63.678; evalue=9.65e-46; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0031625	ubiquitin protein ligase binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=36.823; coverage=63.678; evalue=9.65e-46; UniProt GO evidence=IPI:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0032183	SUMO binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=36.823; coverage=63.678; evalue=9.65e-46; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0061630	ubiquitin protein ligase activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=36.823; coverage=63.678; evalue=9.65e-46; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT5G60870	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=62.85; coverage=98.391; evalue=0.0	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	hsa:8924	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=36.823; coverage=63.678; evalue=9.65e-46	UniProtKB/Swiss-Prot DAT 2026 current_release