Gene Annotation
Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.
Search Results
| Gene ID | LXL04_010135 |
|---|---|
| Query reference | OH1004 |
| Location | Chr02:140827114-140828728 (-) |
| Description | Similar to PUB4: U-box domain-containing protein 4 (Arabidopsis thaliana OX%3D3702) |
| Annotation source assembly | GCA_047496595.1_OSU_TarKok_2.0 |
Functional annotation source: OH1004 · LXL04_010135 · GCA_047496595.1_OSU_TarKok_2.0.
This query returns 33 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.
Arabidopsis / Rice Reference Genes and Papers
Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.
Download references for this gene
Arabidopsis
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
At2g23140 |
Functions as an E3 ubiquitin ligase. | No verified direct reference in this release |
At5g67340 |
Functions as an E3 ubiquitin ligase. | No verified direct reference in this release |
Rice
No hit for this species in the current source table.
GO / KEGG
These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.
| Type | ID | Name | Namespace | Evidence | Source |
|---|---|---|---|---|---|
| GO | GO:0000011 | vacuole inheritance | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=21.875; coverage=67.954; evalue=1.75e-09; UniProt GO evidence=IEA:EnsemblFungi | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000045 | autophagosome assembly | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=21.875; coverage=67.954; evalue=1.75e-09; UniProt GO evidence=IEA:EnsemblFungi | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000425 | pexophagy | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=21.875; coverage=67.954; evalue=1.75e-09; UniProt GO evidence=IEA:EnsemblFungi | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006629 | lipid metabolic process | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=21.591; coverage=67.954; evalue=9.23e-08; UniProt GO evidence=NAS:ComplexPortal | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006914 | autophagy | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=21.591; coverage=67.954; evalue=9.23e-08; UniProt GO evidence=IDA:SGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0016236 | macroautophagy | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=21.591; coverage=67.954; evalue=9.23e-08; UniProt GO evidence=IMP:SGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0016567 | protein ubiquitination | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=26.014; coverage=57.143; evalue=1.63e-13; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0031503 | protein-containing complex localization | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=21.591; coverage=67.954; evalue=9.23e-08; UniProt GO evidence=IMP:SGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0034497 | protein localization to phagophore assembly site | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=21.591; coverage=67.954; evalue=9.23e-08; UniProt GO evidence=IMP:SGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0034517 | ribophagy | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=21.875; coverage=67.954; evalue=1.75e-09; UniProt GO evidence=IEA:EnsemblFungi | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0034614 | cellular response to reactive oxygen species | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=26.014; coverage=57.143; evalue=1.63e-13; UniProt GO evidence=IGI:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0034727 | piecemeal microautophagy of the nucleus | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=21.875; coverage=67.954; evalue=1.75e-09; UniProt GO evidence=IEA:EnsemblFungi | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0042144 | vacuole fusion, non-autophagic | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=21.875; coverage=67.954; evalue=1.75e-09; UniProt GO evidence=IEA:EnsemblFungi | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0048364 | root development | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=26.014; coverage=57.143; evalue=1.63e-13; UniProt GO evidence=IGI:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0048658 | anther wall tapetum development | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=26.014; coverage=57.143; evalue=1.63e-13; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0051656 | establishment of organelle localization | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=21.591; coverage=67.954; evalue=9.23e-08; UniProt GO evidence=IMP:SGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0061724 | lipophagy | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=21.875; coverage=67.954; evalue=1.75e-09; UniProt GO evidence=IEA:EnsemblFungi | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0071562 | nucleus-vacuole junction assembly | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=21.875; coverage=67.954; evalue=1.75e-09; UniProt GO evidence=IEA:EnsemblFungi | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:1903044 | protein localization to membrane raft | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=21.875; coverage=67.954; evalue=1.75e-09; UniProt GO evidence=IEA:EnsemblFungi | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:1904821 | chloroplast disassembly | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=26.014; coverage=57.143; evalue=1.63e-13; UniProt GO evidence=IGI:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000407 | phagophore assembly site | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=21.875; coverage=67.954; evalue=1.75e-09; UniProt GO evidence=IEA:EnsemblFungi | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005634 | nucleus | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=26.014; coverage=57.143; evalue=1.63e-13; UniProt GO evidence=ISM:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005640 | nuclear outer membrane | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=21.591; coverage=67.954; evalue=9.23e-08; UniProt GO evidence=NAS:ComplexPortal | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005737 | cytoplasm | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=26.014; coverage=57.143; evalue=1.63e-13; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005829 | cytosol | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=21.591; coverage=67.954; evalue=9.23e-08; UniProt GO evidence=HDA:SGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0016020 | membrane | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=21.591; coverage=67.954; evalue=9.23e-08; UniProt GO evidence=IDA:SGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0031965 | nuclear membrane | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=21.875; coverage=67.954; evalue=1.75e-09; UniProt GO evidence=IEA:EnsemblFungi | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0045121 | membrane raft | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=21.875; coverage=67.954; evalue=1.75e-09; UniProt GO evidence=IEA:EnsemblFungi | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0071561 | nucleus-vacuole junction | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=21.875; coverage=67.954; evalue=1.75e-09; UniProt GO evidence=IEA:EnsemblFungi | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0071563 | Myo2p-Vac17p-Vac8p transport complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=21.875; coverage=67.954; evalue=1.75e-09; UniProt GO evidence=IEA:EnsemblFungi | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0042802 | identical protein binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=21.875; coverage=67.954; evalue=1.75e-09; UniProt GO evidence=IEA:EnsemblFungi | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0043495 | protein-membrane adaptor activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=21.875; coverage=67.954; evalue=1.75e-09; UniProt GO evidence=IEA:EnsemblFungi | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0061630 | ubiquitin protein ligase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=26.014; coverage=57.143; evalue=1.63e-13; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| KEGG | ago:AGOS_AEL048W | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=21.937; coverage=67.761; evalue=1.36e-07 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ath:AT2G23140 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=26.014; coverage=57.143; evalue=1.63e-13 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ath:AT5G67340 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=24.832; coverage=57.529; evalue=5.95e-07 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | cgr:2891501 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=21.875; coverage=67.954; evalue=1.75e-09 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | sce:YEL013W | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=21.591; coverage=67.954; evalue=9.23e-08 | UniProtKB/Swiss-Prot DAT 2026 current_release |