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Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene IDLXL04_009609
Query referenceOH1004
LocationChr02:129645266-129646472 (+)
DescriptionSimilar to Transcription factor MYB1R1 (Solanum tuberosum OX%3D4113)
Annotation source assemblyGCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_009609 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 33 GO annotations and 4 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g47390 Transcriptional repressor.
A novel Arabidopsis MYB-like transcription factor, MYBH, regulates hypocotyl elongation by enhancing auxin accumulation.2013 · DOI: 10.1093/jxb/ert223
Transcriptional control of ROS homeostasis by KUODA1 regulates cell expansion during leaf development.2014 · DOI: 10.1038/ncomms4767
A single-repeat MYB transcription repressor, MYBH, participates in regulation of leaf senescence in Arabidopsis.2015 · DOI: 10.1007/s11103-015-0321-2
At5g61620 Probable transcription factor involved in somatic embryogenesis.
Stress-related function of bHLH109 in somatic embryo induction in Arabidopsis.2016 · DOI: 10.1016/j.jplph.2016.02.012
At5g08520 Transcription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'.
Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.2015 · DOI: 10.1104/pp.15.00962

Rice

Reference gene IDPossible functionPapers / DOI
Os10g0561400 Transcription repressor that binds to 5'-TATCCA-3' elements in gene promoters.
Three novel MYB proteins with one DNA binding repeat mediate sugar and hormone regulation of alpha-amylase gene expression.2002 · DOI: 10.1105/tpc.001735
A novel MYBS3-dependent pathway confers cold tolerance in rice.2010 · DOI: 10.1104/pp.110.153015

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

TypeIDNameNamespaceEvidenceSource
GOGO:0000122negative regulation of transcription by RNA polymerase IIBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=50.829; coverage=66.79; evalue=3.3e-51; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0006351DNA-templated transcriptionBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=64.486; coverage=78.967; evalue=1.48e-69; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0006355regulation of DNA-templated transcriptionBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=64.486; coverage=78.967; evalue=1.48e-69; UniProt GO evidence=IEA:UniProtKB-ARBAUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009414response to water deprivationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=55.556; coverage=39.852; evalue=1.25e-33; UniProt GO evidence=IEP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009646response to absence of lightBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=50.829; coverage=66.79; evalue=3.3e-51; UniProt GO evidence=IEP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009651response to salt stressBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=55.556; coverage=39.852; evalue=1.25e-33; UniProt GO evidence=IEP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009723response to ethyleneBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=50.829; coverage=66.79; evalue=3.3e-51; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009737response to abscisic acidBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=50.829; coverage=66.79; evalue=3.3e-51; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009738abscisic acid-activated signaling pathwayBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=55.556; coverage=39.852; evalue=1.25e-33; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009739response to gibberellinBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=50.829; coverage=66.79; evalue=3.3e-51; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009744response to sucroseBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=50.829; coverage=66.79; evalue=3.3e-51; UniProt GO evidence=IEA:EnsemblPlantsUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009751response to salicylic acidBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=55.556; coverage=39.852; evalue=1.25e-33; UniProt GO evidence=IEP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009787regulation of abscisic acid-activated signaling pathwayBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=55.556; coverage=39.852; evalue=1.25e-33; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0010116positive regulation of abscisic acid biosynthetic processBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=55.556; coverage=39.852; evalue=1.25e-33; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0010150leaf senescenceBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=50.829; coverage=66.79; evalue=3.3e-51; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0010597green leaf volatile biosynthetic processBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=64.486; coverage=78.967; evalue=1.48e-69; UniProt GO evidence=IEA:UniProtKB-ARBAUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0030307positive regulation of cell growthBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=50.829; coverage=66.79; evalue=3.3e-51; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0045892negative regulation of DNA-templated transcriptionBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=50.829; coverage=66.79; evalue=3.3e-51; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0045893positive regulation of DNA-templated transcriptionBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=55.556; coverage=39.852; evalue=1.25e-33; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0048366leaf developmentBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=50.829; coverage=66.79; evalue=3.3e-51; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0048527lateral root developmentBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=50.829; coverage=66.79; evalue=3.3e-51; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0090697post-embryonic plant organ morphogenesisBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=50.829; coverage=66.79; evalue=3.3e-51; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0140964intracellular auxin homeostasisBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=50.829; coverage=66.79; evalue=3.3e-51; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:1901001negative regulation of response to salt stressBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=55.556; coverage=39.852; evalue=1.25e-33; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:1901371regulation of leaf morphogenesisBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=55.556; coverage=39.852; evalue=1.25e-33; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:1905615positive regulation of developmental vegetative growthBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=55.556; coverage=39.852; evalue=1.25e-33; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:2000377regulation of reactive oxygen species metabolic processBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=50.829; coverage=66.79; evalue=3.3e-51; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005634nucleusCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=64.486; coverage=78.967; evalue=1.48e-69; UniProt GO evidence=IEA:UniProtKB-SubCellUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005829cytosolCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=64.486; coverage=78.967; evalue=1.48e-69; UniProt GO evidence=IEA:UniProtKB-SubCellUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0000976transcription cis-regulatory region bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=64.486; coverage=78.967; evalue=1.48e-69; UniProt GO evidence=IEA:UniProtKB-ARBAUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0003677DNA bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=40.933; coverage=71.218; evalue=2.21e-38; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0003700DNA-binding transcription factor activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=50.829; coverage=66.79; evalue=3.3e-51; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0008270zinc ion bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=50.829; coverage=66.79; evalue=3.3e-51; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT5G08520KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=55.556; coverage=39.852; evalue=1.25e-33UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT5G47390KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=50.829; coverage=66.79; evalue=3.3e-51UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT5G61620KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=40.933; coverage=71.218; evalue=2.21e-38UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGsot:102577613KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=64.486; coverage=78.967; evalue=1.48e-69UniProtKB/Swiss-Prot DAT 2026 current_release