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Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene IDLXL04_005515
Query referenceOH1004
LocationChr01:166380448-166382419 (-)
DescriptionSimilar to SGT1B: Protein SGT1 homolog B (Arabidopsis thaliana OX%3D3702)
Annotation source assemblyGCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_005515 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 32 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At4g11260 Involved in plant innate immunity.
Regulatory role of SGT1 in early R gene-mediated plant defenses.2002 · DOI: 10.1126/science.1067747
Arabidopsis SGT1b is required for defense signaling conferred by several downy mildew resistance genes.2002 · DOI: 10.1105/tpc.001123
Arabidopsis SGT1b is required for SCF(TIR1)-mediated auxin response.2003 · DOI: 10.1105/tpc.010884
Antagonistic control of disease resistance protein stability in the plant immune system.2005 · DOI: 10.1126/science.1109977
Role of SGT1 in resistance protein accumulation in plant immunity.2006 · DOI: 10.1038/sj.emboj.7601084
Interaction between SGT1 and cytosolic/nuclear HSC70 chaperones regulates Arabidopsis immune responses.2007 · DOI: 10.1105/tpc.107.051896
Enhanced defense responses in Arabidopsis induced by the cell wall protein fractions from Pythium oligandrum require SGT1, RAR1, NPR1 and JAR1.2009 · DOI: 10.1093/pcp/pcp044
SGT1 contributes to coronatine signaling and Pseudomonas syringae pv. tomato disease symptom development in tomato and Arabidopsis.2011 · DOI: 10.1111/j.1469-8137.2010.03470.x
At4g23570 Functions in R gene-mediated resistance, but participates in a lower extent than SGT1B to RPP5-mediated resistance.
Role of SGT1 in resistance protein accumulation in plant immunity.2006 · DOI: 10.1038/sj.emboj.7601084

Rice

Reference gene IDPossible functionPapers / DOI
Os01g0624500 May participate in basal resistance to bacterial blight in rice.
OsRAR1 and OsSGT1 physically interact and function in rice basal disease resistance.2008 · DOI: 10.1094/mpmi-21-3-0294

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

TypeIDNameNamespaceEvidenceSource
GOGO:0006511ubiquitin-dependent protein catabolic processBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=52.793; coverage=107.831; evalue=3.46e-131; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0006952defense responseBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=56.135; coverage=98.193; evalue=8.41e-125; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0007051spindle organizationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=33.639; coverage=98.494; evalue=2.75e-57; UniProt GO evidence=IMP:MGIUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009408response to heatBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=52.793; coverage=107.831; evalue=3.46e-131; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009734auxin-activated signaling pathwayBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=52.793; coverage=107.831; evalue=3.46e-131; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009793embryo development ending in seed dormancyBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=52.793; coverage=107.831; evalue=3.46e-131; UniProt GO evidence=IGI:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009867jasmonic acid mediated signaling pathwayBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=52.793; coverage=107.831; evalue=3.46e-131; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0010187negative regulation of seed germinationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=52.793; coverage=107.831; evalue=3.46e-131; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0014841skeletal muscle satellite cell proliferationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=33.639; coverage=98.494; evalue=2.75e-57; UniProt GO evidence=IDA:MGIUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0030163protein catabolic processBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=52.793; coverage=107.831; evalue=3.46e-131; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0031647regulation of protein stabilityBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=33.639; coverage=98.494; evalue=2.75e-57; UniProt GO evidence=ISO:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0042742defense response to bacteriumBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=55.249; coverage=109.036; evalue=1.38e-125; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0045087innate immune responseBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=52.793; coverage=107.831; evalue=3.46e-131; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0050832defense response to fungusBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=52.793; coverage=107.831; evalue=3.46e-131; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0051382kinetochore assemblyBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=33.639; coverage=98.494; evalue=2.75e-57; UniProt GO evidence=IMP:MGIUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0071365cellular response to auxin stimulusBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=56.135; coverage=98.193; evalue=8.41e-125; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0071456cellular response to hypoxiaBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=56.135; coverage=98.193; evalue=8.41e-125; UniProt GO evidence=HEP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:1900150regulation of defense response to fungusBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=52.793; coverage=107.831; evalue=3.46e-131; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0000776kinetochoreCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=33.639; coverage=98.494; evalue=2.75e-57; UniProt GO evidence=IDA:MGIUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0001669acrosomal vesicleCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=33.639; coverage=98.494; evalue=2.75e-57; UniProt GO evidence=ISO:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005634nucleusCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=52.793; coverage=107.831; evalue=3.46e-131; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005737cytoplasmCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=52.793; coverage=107.831; evalue=3.46e-131; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005814centrioleCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=33.639; coverage=98.494; evalue=2.75e-57; UniProt GO evidence=ISO:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005829cytosolCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=52.793; coverage=107.831; evalue=3.46e-131; UniProt GO evidence=HDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0016604nuclear bodyCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=33.639; coverage=98.494; evalue=2.75e-57; UniProt GO evidence=ISO:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0019005SCF ubiquitin ligase complexCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=52.793; coverage=107.831; evalue=3.46e-131; UniProt GO evidence=TAS:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0032991protein-containing complexCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=33.639; coverage=98.494; evalue=2.75e-57; UniProt GO evidence=ISO:MGIUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0097225sperm midpieceCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=33.639; coverage=98.494; evalue=2.75e-57; UniProt GO evidence=ISO:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0097228sperm principal pieceCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=33.639; coverage=98.494; evalue=2.75e-57; UniProt GO evidence=ISO:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0097229sperm end pieceCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=33.639; coverage=98.494; evalue=2.75e-57; UniProt GO evidence=ISO:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0051087protein-folding chaperone bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=52.793; coverage=107.831; evalue=3.46e-131; UniProt GO evidence=IEA:InterProUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0106222lncRNA bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=33.639; coverage=98.494; evalue=2.75e-57; UniProt GO evidence=IPI:MGIUniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT4G11260KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=52.793; coverage=107.831; evalue=3.46e-131UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT4G23570KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=56.135; coverage=98.193; evalue=8.41e-125UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGdosa:Os01g0624500KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=55.249; coverage=109.036; evalue=1.38e-125UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGmmu:67955KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=33.639; coverage=98.494; evalue=2.75e-57UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGzma:103636097KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=54.062; coverage=107.53; evalue=5.25e-122UniProtKB/Swiss-Prot DAT 2026 current_release