Gene Annotation
Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.
Search Results
| Gene ID | LXL04_004720 |
|---|---|
| Query reference | OH1004 |
| Location | Chr01:144694387-144696667 (+) |
| Description | Similar to OTU6: OVARIAN TUMOR DOMAIN-containing deubiquitinating enzyme 6 (Arabidopsis thaliana OX%3D3702) |
| Annotation source assembly | GCA_047496595.1_OSU_TarKok_2.0 |
Functional annotation source: OH1004 · LXL04_004720 · GCA_047496595.1_OSU_TarKok_2.0.
This query returns 34 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.
Arabidopsis / Rice Reference Genes and Papers
Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.
Download references for this gene
Arabidopsis
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
At2g27350 |
Hydrolase that can remove conjugated ubiquitin from proteins in vitro and may therefore play an important regulatory role at the level of protein turnover by preventing degradation. |
Involvement of KDM1C histone demethylase-OTLD1 otubain-like histone deubiquitinase complexes in plant gene repression.2011 · DOI: 10.1073/pnas.1014030108 Distinct phylogenetic relationships and biochemical properties of Arabidopsis ovarian tumor-related deubiquitinases support their functional differentiation.2014 · DOI: 10.3389/fpls.2014.00084
|
Rice
No hit for this species in the current source table.
GO / KEGG
These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.
| Type | ID | Name | Namespace | Evidence | Source |
|---|---|---|---|---|---|
| GO | GO:0001817 | regulation of cytokine production | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=42.562; coverage=49.287; evalue=5.56e-63; UniProt GO evidence=IEA:UniProtKB-ARBA | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006508 | proteolysis | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=71.164; coverage=76.986; evalue=8.83e-178; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009966 | regulation of signal transduction | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=71.164; coverage=76.986; evalue=8.83e-178; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0010629 | negative regulation of gene expression | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=42.562; coverage=49.287; evalue=5.56e-63; UniProt GO evidence=IEA:UniProtKB-ARBA | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0016579 | protein deubiquitination | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=40.996; coverage=53.157; evalue=9.24e-63; UniProt GO evidence=ISO:MGI | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0030154 | cell differentiation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=42.562; coverage=49.287; evalue=5.56e-63; UniProt GO evidence=IEA:UniProtKB-ARBA | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0031647 | regulation of protein stability | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=40.996; coverage=53.157; evalue=9.24e-63; UniProt GO evidence=IMP:MGI | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0032496 | response to lipopolysaccharide | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=42.562; coverage=49.287; evalue=5.56e-63; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0032700 | negative regulation of interleukin-17 production | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=40.996; coverage=53.157; evalue=9.24e-63; UniProt GO evidence=IMP:MGI | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0040029 | epigenetic regulation of gene expression | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=71.164; coverage=76.986; evalue=8.83e-178; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0043161 | proteasome-mediated ubiquitin-dependent protein catabolic process | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=40.996; coverage=53.157; evalue=9.24e-63; UniProt GO evidence=IDA:MGI | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0045814 | negative regulation of gene expression, epigenetic | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=71.164; coverage=76.986; evalue=8.83e-178; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0045892 | negative regulation of DNA-templated transcription | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=71.164; coverage=76.986; evalue=8.83e-178; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0045893 | positive regulation of DNA-templated transcription | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=71.164; coverage=76.986; evalue=8.83e-178; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0045927 | positive regulation of growth | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=71.164; coverage=76.986; evalue=8.83e-178; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0050776 | regulation of immune response | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=42.562; coverage=49.287; evalue=5.56e-63; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0051241 | negative regulation of multicellular organismal process | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=42.562; coverage=49.287; evalue=5.56e-63; UniProt GO evidence=IEA:UniProtKB-ARBA | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0070536 | protein K63-linked deubiquitination | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=42.562; coverage=49.287; evalue=5.56e-63; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0071108 | protein K48-linked deubiquitination | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=42.562; coverage=49.287; evalue=5.56e-63; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0090090 | negative regulation of canonical Wnt signaling pathway | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=42.562; coverage=49.287; evalue=5.56e-63; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:1902275 | regulation of chromatin organization | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=71.164; coverage=76.986; evalue=8.83e-178; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:1904263 | positive regulation of TORC1 signaling | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=42.562; coverage=49.287; evalue=5.56e-63; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:1904515 | positive regulation of TORC2 signaling | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=42.562; coverage=49.287; evalue=5.56e-63; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005634 | nucleus | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=71.164; coverage=76.986; evalue=8.83e-178; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005737 | cytoplasm | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=71.164; coverage=76.986; evalue=8.83e-178; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009507 | chloroplast | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=71.164; coverage=76.986; evalue=8.83e-178; UniProt GO evidence=ISM:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003682 | chromatin binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=71.164; coverage=76.986; evalue=8.83e-178; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0004843 | cysteine-type deubiquitinase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=71.164; coverage=76.986; evalue=8.83e-178; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0031491 | nucleosome binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=71.164; coverage=76.986; evalue=8.83e-178; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0042393 | histone binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=71.164; coverage=76.986; evalue=8.83e-178; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0061578 | K63-linked deubiquitinase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=71.164; coverage=76.986; evalue=8.83e-178; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0101005 | deubiquitinase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=40.996; coverage=53.157; evalue=9.24e-63; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0140934 | histone deubiquitinase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=71.164; coverage=76.986; evalue=8.83e-178; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:1990380 | K48-linked deubiquitinase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=40.996; coverage=53.157; evalue=9.24e-63; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| KEGG | ath:AT2G27350 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=71.164; coverage=76.986; evalue=8.83e-178 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | dre:555459 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=42.562; coverage=49.287; evalue=5.56e-63 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | mmu:54644 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=40.996; coverage=53.157; evalue=9.24e-63 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | rno:363452 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=40.996; coverage=53.157; evalue=1.02e-62 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | xtr:448134 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=38.909; coverage=56.008; evalue=6.02e-62 | UniProtKB/Swiss-Prot DAT 2026 current_release |