Gene Annotation
Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.
Search Results
| Gene ID | LXL04_001106 |
|---|---|
| Query reference | OH1004 |
| Location | Chr01:20387155-20388549 (-) |
| Description | Similar to At3g63000: NPL4-like protein 1 (Arabidopsis thaliana OX%3D3702) |
| Annotation source assembly | GCA_047496595.1_OSU_TarKok_2.0 |
Functional annotation source: OH1004 · LXL04_001106 · GCA_047496595.1_OSU_TarKok_2.0.
This query returns 28 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.
Arabidopsis / Rice Reference Genes and Papers
Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.
Download references for this gene
Arabidopsis
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
At3g63000 |
May be part of a complex that binds ubiquitinated proteins and that is necessary for the export of misfolded proteins from the ER to the cytoplasm, where they are degraded by the proteasome (By similarity). | No verified direct reference in this release |
At2g47970 |
May be part of a complex that binds ubiquitinated proteins and that is necessary for the export of misfolded proteins from the ER to the cytoplasm, where they are degraded by the proteasome (By similarity). | No verified direct reference in this release |
Rice
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
Os01g0377700 |
May be part of a complex that binds ubiquitinated proteins and that is necessary for the export of misfolded proteins from the ER to the cytoplasm, where they are degraded by the proteasome. | No verified direct reference in this release |
GO / KEGG
These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.
| Type | ID | Name | Namespace | Evidence | Source |
|---|---|---|---|---|---|
| GO | GO:0006511 | ubiquitin-dependent protein catabolic process | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=69.512; coverage=99.757; evalue=0.0; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0007030 | Golgi organization | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=27.445; coverage=77.129; evalue=7.69e-18; UniProt GO evidence=ISS:HGNC-UCL | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0010498 | proteasomal protein catabolic process | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=69.512; coverage=99.757; evalue=0.0; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0030970 | retrograde protein transport, ER to cytosol | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=35.379; coverage=67.397; evalue=2.19e-34; UniProt GO evidence=ISS:dictyBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0032480 | negative regulation of type I interferon production | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=27.445; coverage=77.129; evalue=7.69e-18; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0034614 | cellular response to reactive oxygen species | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=69.512; coverage=99.757; evalue=0.0; UniProt GO evidence=IEP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0036503 | ERAD pathway | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=27.445; coverage=77.129; evalue=7.69e-18; UniProt GO evidence=NAS:ComplexPortal | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0039536 | negative regulation of RIG-I signaling pathway | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=27.445; coverage=77.129; evalue=7.69e-18; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0043161 | proteasome-mediated ubiquitin-dependent protein catabolic process | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=69.512; coverage=99.757; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-UniPathway | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0072344 | rescue of stalled cytosolic ribosome | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=27.445; coverage=77.129; evalue=7.69e-18; UniProt GO evidence=NAS:ComplexPortal | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:1902882 | regulation of response to oxidative stress | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=69.512; coverage=99.757; evalue=0.0; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:1990116 | ribosome-associated ubiquitin-dependent protein catabolic process | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=27.445; coverage=77.129; evalue=7.69e-18; UniProt GO evidence=NAS:ComplexPortal | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005634 | nucleus | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=69.512; coverage=99.757; evalue=0.0; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005654 | nucleoplasm | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=27.445; coverage=77.129; evalue=7.69e-18; UniProt GO evidence=IDA:HPA | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005737 | cytoplasm | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=69.512; coverage=99.757; evalue=0.0; UniProt GO evidence=ISM:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005783 | endoplasmic reticulum | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=57.995; coverage=101.946; evalue=1.21e-172; UniProt GO evidence=IEA:UniProtKB-SubCell | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005829 | cytosol | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=69.417; coverage=100.243; evalue=0.0; UniProt GO evidence=HDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009707 | chloroplast outer membrane | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=69.512; coverage=99.757; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-SubCell | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0034098 | VCP-NPL4-UFD1 AAA ATPase complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=27.445; coverage=77.129; evalue=7.69e-18; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0036501 | UFD1-NPL4 complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=27.445; coverage=77.129; evalue=7.69e-18; UniProt GO evidence=IPI:ParkinsonsUK-UCL | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0042175 | nuclear outer membrane-endoplasmic reticulum membrane network | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=35.379; coverage=67.397; evalue=2.19e-34; UniProt GO evidence=ISS:dictyBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0008270 | zinc ion binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=27.445; coverage=77.129; evalue=7.69e-18; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0031625 | ubiquitin protein ligase binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=69.512; coverage=99.757; evalue=0.0; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0036435 | K48-linked polyubiquitin modification-dependent protein binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=27.445; coverage=77.129; evalue=7.69e-18; UniProt GO evidence=IEA:Ensembl | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0043130 | ubiquitin binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=69.512; coverage=99.757; evalue=0.0; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0044877 | protein-containing complex binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=27.445; coverage=77.129; evalue=7.69e-18; UniProt GO evidence=IEA:Ensembl | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0051117 | ATPase binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=27.445; coverage=77.129; evalue=7.69e-18; UniProt GO evidence=IEA:Ensembl | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0070530 | K63-linked polyubiquitin modification-dependent protein binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=27.445; coverage=77.129; evalue=7.69e-18; UniProt GO evidence=IEA:Ensembl | UniProtKB/Swiss-Prot DAT 2026 current_release |
| KEGG | ath:AT2G47970 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=69.417; coverage=100.243; evalue=0.0 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ath:AT3G63000 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=69.512; coverage=99.757; evalue=0.0 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ddi:DDB_G0290227 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=35.379; coverage=67.397; evalue=2.19e-34 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | dosa:Os01g0377700 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=57.995; coverage=101.946; evalue=1.21e-172 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | hsa:55666 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=27.445; coverage=77.129; evalue=7.69e-18 | UniProtKB/Swiss-Prot DAT 2026 current_release |