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Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene IDTkA07G077740
Query referenceTK1151
LocationChr07:20235465-20245484 (+)
DescriptionSimilar to NRPE1: DNA-directed RNA polymerase V subunit 1 (Arabidopsis thaliana OX%3D3702)
Annotation source assemblyGCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_027604 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

This query returns 45 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At2g40030 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
Atypical RNA polymerase subunits required for RNA-directed DNA methylation.2005 · DOI: 10.1038/ng1580
Reinforcement of silencing at transposons and highly repeated sequences requires the concerted action of two distinct RNA polymerases IV in Arabidopsis.2005 · DOI: 10.1101/gad.348405
The Arabidopsis chromatin-modifying nuclear siRNA pathway involves a nucleolar RNA processing center.2006 · DOI: 10.1016/j.cell.2006.05.031
PolIVb influences RNA-directed DNA methylation independently of its role in siRNA biogenesis.2008 · DOI: 10.1073/pnas.0709632105
NRPD1a and NRPD1b are required to maintain post-transcriptional RNA silencing and RNA-directed DNA methylation in Arabidopsis.2008 · DOI: 10.1111/j.1365-313x.2008.03525.x
At1g63020 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (By similarity).
Reinforcement of silencing at transposons and highly repeated sequences requires the concerted action of two distinct RNA polymerases IV in Arabidopsis.2005 · DOI: 10.1101/gad.348405
DICER-LIKE 4 is required for RNA interference and produces the 21-nucleotide small interfering RNA component of the plant cell-to-cell silencing signal.2005 · DOI: 10.1038/ng1675
Endogenous siRNAs derived from a pair of natural cis-antisense transcripts regulate salt tolerance in Arabidopsis.2005 · DOI: 10.1016/j.cell.2005.11.035
An SNF2 protein associated with nuclear RNA silencing and the spread of a silencing signal between cells in Arabidopsis.2007 · DOI: 10.1105/tpc.107.051540
Intra- and intercellular RNA interference in Arabidopsis thaliana requires components of the microRNA and heterochromatic silencing pathways.2007 · DOI: 10.1038/ng2081
Nuclear gene silencing directs reception of long-distance mRNA silencing in Arabidopsis.2007 · DOI: 10.1073/pnas.0706701104
PolIVb influences RNA-directed DNA methylation independently of its role in siRNA biogenesis.2008 · DOI: 10.1073/pnas.0709632105
NRPD1a and NRPD1b are required to maintain post-transcriptional RNA silencing and RNA-directed DNA methylation in Arabidopsis.2008 · DOI: 10.1111/j.1365-313x.2008.03525.x
At4g35800 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. No verified direct reference in this release

Rice

No hit for this species in the current source table.

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

TypeIDNameNamespaceEvidenceSource
GOGO:0006351DNA-templated transcriptionBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=47.653; coverage=101.135; evalue=0.0; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0006353DNA-templated transcription terminationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=24.027; coverage=45.098; evalue=4.73e-52; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0006355regulation of DNA-templated transcriptionBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=24.027; coverage=45.098; evalue=4.73e-52; UniProt GO evidence=NAS:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0006366transcription by RNA polymerase IIBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=24.027; coverage=45.098; evalue=4.73e-52; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0006367transcription initiation at RNA polymerase II promoterBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=26.359; coverage=43.653; evalue=3.2e-57; UniProt GO evidence=IDA:PomBaseUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0006368transcription elongation by RNA polymerase IIBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=26.359; coverage=43.653; evalue=3.2e-57; UniProt GO evidence=TAS:PomBaseUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0006369termination of RNA polymerase II transcriptionBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=26.359; coverage=43.653; evalue=3.2e-57; UniProt GO evidence=IMP:PomBaseUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:00063707-methylguanosine mRNA cappingBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=26.359; coverage=43.653; evalue=3.2e-57; UniProt GO evidence=TAS:PomBaseUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0019985translesion synthesisBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=25.297; coverage=43.447; evalue=6.67e-53; UniProt GO evidence=IEA:EnsemblFungiUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0030422siRNA processingBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=47.653; coverage=101.135; evalue=0.0; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0030643intracellular phosphate ion homeostasisBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=26.359; coverage=43.653; evalue=3.2e-57; UniProt GO evidence=IMP:PomBaseUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0033120positive regulation of RNA splicingBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=24.027; coverage=45.098; evalue=4.73e-52; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0035194regulatory ncRNA-mediated post-transcriptional gene silencingBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=47.653; coverage=101.135; evalue=0.0; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0042789mRNA transcription by RNA polymerase IIBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=26.359; coverage=43.653; evalue=3.2e-57; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0050832defense response to fungusBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=47.653; coverage=101.135; evalue=0.0; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0180034co-transcriptional lncRNA 3' end processing, cleavage and polyadenylation pathwayBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=26.359; coverage=43.653; evalue=3.2e-57; UniProt GO evidence=IMP:PomBaseUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0000418RNA polymerase IV complexCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=47.653; coverage=101.135; evalue=0.0; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0000419RNA polymerase V complexCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=47.653; coverage=101.135; evalue=0.0; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0000785chromatinCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=26.359; coverage=43.653; evalue=3.2e-57; UniProt GO evidence=IDA:PomBaseUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0000791euchromatinCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=24.027; coverage=45.098; evalue=4.31e-52; UniProt GO evidence=IEA:EnsemblUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005634nucleusCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=47.653; coverage=101.135; evalue=0.0; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005654nucleoplasmCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=24.027; coverage=45.098; evalue=4.73e-52; UniProt GO evidence=TAS:ReactomeUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005665RNA polymerase II, core complexCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=26.359; coverage=43.653; evalue=3.2e-57; UniProt GO evidence=IDA:PomBaseUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005694chromosomeCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=24.027; coverage=45.098; evalue=4.73e-52; UniProt GO evidence=IDA:UniProtUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005730nucleolusCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=47.653; coverage=101.135; evalue=0.0; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005737cytoplasmCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=24.027; coverage=45.098; evalue=4.73e-52; UniProt GO evidence=IEA:UniProtKB-SubCellUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005829cytosolCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=24.027; coverage=45.098; evalue=4.31e-52; UniProt GO evidence=IEA:EnsemblUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0016591RNA polymerase II, holoenzymeCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=26.359; coverage=43.653; evalue=3.2e-57; UniProt GO evidence=EXP:PomBaseUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0016604nuclear bodyCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=47.653; coverage=101.135; evalue=0.0; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0030880RNA polymerase complexCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=47.653; coverage=101.135; evalue=0.0; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0000287magnesium ion bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=24.027; coverage=45.098; evalue=4.31e-52; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0001046core promoter sequence-specific DNA bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=24.027; coverage=45.098; evalue=4.31e-52; UniProt GO evidence=IEA:EnsemblUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0003677DNA bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=47.653; coverage=101.135; evalue=0.0; UniProt GO evidence=IEA:InterProUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0003723RNA bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=24.027; coverage=45.098; evalue=4.73e-52; UniProt GO evidence=HDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0003899DNA-directed RNA polymerase activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=47.653; coverage=101.135; evalue=0.0; UniProt GO evidence=ISS:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0003968RNA-directed RNA polymerase activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=25.297; coverage=43.447; evalue=6.67e-53; UniProt GO evidence=IEA:EnsemblFungiUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0008270zinc ion bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=24.027; coverage=45.098; evalue=4.31e-52; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0016787hydrolase activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=24.027; coverage=45.098; evalue=4.31e-52; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0019900kinase bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=24.027; coverage=45.098; evalue=4.73e-52; UniProt GO evidence=IPI:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0031625ubiquitin protein ligase bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=24.027; coverage=45.098; evalue=4.73e-52; UniProt GO evidence=IPI:BHF-UCLUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0046872metal ion bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=47.653; coverage=101.135; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0050436microfibril bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=24.027; coverage=45.098; evalue=4.73e-52; UniProt GO evidence=IDA:DisProtUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0071667DNA/RNA hybrid bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=24.027; coverage=45.098; evalue=4.31e-52; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0140463chromatin-protein adaptor activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=26.359; coverage=43.653; evalue=3.2e-57; UniProt GO evidence=IDA:PomBaseUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:1990841promoter-specific chromatin bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=24.027; coverage=45.098; evalue=4.73e-52; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
KEGGago:AGOS_ADR086CKEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=25.297; coverage=43.447; evalue=6.67e-53UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT2G40030KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=47.653; coverage=101.135; evalue=0.0UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGbta:282312KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=24.027; coverage=45.098; evalue=4.31e-52UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGhsa:5430KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=24.027; coverage=45.098; evalue=4.73e-52UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGspo:2540292KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=26.359; coverage=43.653; evalue=3.2e-57UniProtKB/Swiss-Prot DAT 2026 current_release