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Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene IDTkA04G475900
Query referenceTK1151
LocationChr04:120172639-120176775 (+)
DescriptionSimilar to RFI2: E3 ubiquitin-protein ligase RFI2 (Arabidopsis thaliana OX%3D3702)
Annotation source assemblyGCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_038901 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

This query returns 17 GO annotations and 2 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At2g47700 Mediates phytochrome (phyA and phyB)-controlled seedling deetiolation responses such as hypocotyl elongation in response to red and far-red light. No verified direct reference in this release

Rice

Reference gene IDPossible functionPapers / DOI
Os01g0350900 Functions as an E3 ligase that promotes polyubiquitination of SPL14/IPA1 for subsequent proteasomal degradation.
Tissue-Specific Ubiquitination by IPA1 INTERACTING PROTEIN1 Modulates IPA1 Protein Levels to Regulate Plant Architecture in Rice.2017 · DOI: 10.1105/tpc.16.00879

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

TypeIDNameNamespaceEvidenceSource
GOGO:0007623circadian rhythmBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=40.0; coverage=81.56; evalue=3.54e-60; UniProt GO evidence=IEP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009585red, far-red light phototransductionBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=40.0; coverage=81.56; evalue=3.54e-60; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009908flower developmentBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=40.0; coverage=81.56; evalue=3.54e-60; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0010114response to red lightBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=40.0; coverage=81.56; evalue=3.54e-60; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0010218response to far red lightBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=40.0; coverage=81.56; evalue=3.54e-60; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0010468regulation of gene expressionBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=40.0; coverage=81.56; evalue=3.54e-60; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0010629negative regulation of gene expressionBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=40.0; coverage=81.56; evalue=3.54e-60; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0016567protein ubiquitinationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=40.0; coverage=81.56; evalue=3.54e-60; UniProt GO evidence=IEA:UniProtKB-UniPathwayUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0048450floral organ structural organizationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=56.173; coverage=38.298; evalue=6.11e-50; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0080050regulation of seed developmentBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=56.173; coverage=38.298; evalue=6.11e-50; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0090227regulation of red or far-red light signaling pathwayBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=40.0; coverage=81.56; evalue=3.54e-60; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:2000028regulation of photoperiodism, floweringBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=40.0; coverage=81.56; evalue=3.54e-60; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005634nucleusCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=40.0; coverage=81.56; evalue=3.54e-60; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005737cytoplasmCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=40.0; coverage=81.56; evalue=3.54e-60; UniProt GO evidence=ISM:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0004842ubiquitin-protein transferase activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=40.0; coverage=81.56; evalue=3.54e-60; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0008270zinc ion bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=40.0; coverage=81.56; evalue=3.54e-60; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0061630ubiquitin protein ligase activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=40.0; coverage=81.56; evalue=3.54e-60; UniProt GO evidence=IEA:UniProtKB-ECUniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT2G47700KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=40.0; coverage=81.56; evalue=3.54e-60UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGdosa:Os01g0350900KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=56.173; coverage=38.298; evalue=6.11e-50UniProtKB/Swiss-Prot DAT 2026 current_release