Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene ID	`TkA04G061390`
Query reference	TK1151
Location	Chr04:16375877-16379675 (-)
Description	Similar to AGL15: Agamous-like MADS-box protein AGL15 (Brassica napus OX%3D3708)
Annotation source assembly	GCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_036243 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

This query returns 32 GO annotations and 4 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g57390`	Probable transcription factor involved in the negative regulation of flowering, probably through the photoperiodic pathway.	The MADS domain factors AGL15 and AGL18 act redundantly as repressors of the floral transition in Arabidopsis.2007 · DOI: 10.1111/j.1365-313x.2007.03105.x MADS-complexes regulate transcriptome dynamics during pollen maturation.2007 · DOI: 10.1186/gb-2007-8-11-r249
`At5g13790`	Transcription factor involved in the negative regulation of flowering, probably through the photoperiodic pathway.	The MADS-domain protein AGAMOUS-like 15 accumulates in embryonic tissues with diverse origins.1999 · DOI: 10.1104/pp.120.1.121 The embryo MADS domain factor AGL15 acts postembryonically. Inhibition of perianth senescence and abscission via constitutive expression.2000 · DOI: 10.1105/tpc.12.2.183 Effect of regulated overexpression of the MADS domain factor AGL15 on flower senescence and fruit maturation.2002 · DOI: 10.1104/pp.004721 Binding site selection for the plant MADS domain protein AGL15: an in vitro and in vivo study.2003 · DOI: 10.1074/jbc.m212976200 The embryo MADS domain protein AGAMOUS-Like 15 directly regulates expression of a gene encoding an enzyme involved in gibberellin metabolism.2004 · DOI: 10.1105/tpc.021261 Control of expression and autoregulation of AGL15, a member of the MADS-box family.2005 · DOI: 10.1111/j.1365-313x.2004.02320.x The MADS domain factors AGL15 and AGL18 act redundantly as repressors of the floral transition in Arabidopsis.2007 · DOI: 10.1111/j.1365-313x.2007.03105.x The MADS-domain transcriptional regulator AGAMOUS-LIKE15 promotes somatic embryo development in Arabidopsis and soybean.2008 · DOI: 10.1104/pp.108.115832 Arabidopsis cold shock domain proteins: relationships to floral and silique development.2009 · DOI: 10.1093/jxb/ern351 Global identification of targets of the Arabidopsis MADS domain protein AGAMOUS-Like15.2009 · DOI: 10.1105/tpc.109.068890 The MADS domain protein AGL15 localizes to the nucleus during early stages of seed development.1996 · DOI: 10.1105/tpc.8.11.1977
`At3g57230`	Probable transcription factor involved in the regulation of flowering time in long-day photoperiod.	MicroRNA-mediated regulation of stomatal development in Arabidopsis.2007 · DOI: 10.1105/tpc.107.050377 miR824-Regulated AGAMOUS-LIKE16 Contributes to Flowering Time Repression in Arabidopsis.2014 · DOI: 10.1105/tpc.114.124685

Rice

No hit for this species in the current source table.

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

Type	ID	Name	Namespace	Evidence	Source
GO	GO:0006351	DNA-templated transcription	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=52.299; coverage=61.702; evalue=4.47e-51; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0006357	regulation of transcription by RNA polymerase II	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=42.339; coverage=87.943; evalue=3.97e-49; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009555	pollen development	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=42.339; coverage=87.943; evalue=3.97e-49; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009793	embryo development ending in seed dormancy	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=41.277; coverage=83.333; evalue=7.48e-46; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009908	flower development	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=42.339; coverage=87.943; evalue=3.97e-49; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009910	negative regulation of flower development	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=42.339; coverage=87.943; evalue=3.97e-49; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010047	fruit dehiscence	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=41.277; coverage=83.333; evalue=7.48e-46; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010227	floral organ abscission	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=41.277; coverage=83.333; evalue=7.48e-46; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010262	somatic embryogenesis	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=41.277; coverage=83.333; evalue=7.48e-46; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010440	stomatal lineage progression	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=42.678; coverage=84.752; evalue=7.15e-46; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010629	negative regulation of gene expression	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=41.277; coverage=83.333; evalue=7.48e-46; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0045487	gibberellin catabolic process	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=41.277; coverage=83.333; evalue=7.48e-46; UniProt GO evidence=TAS:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0045892	negative regulation of DNA-templated transcription	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=41.277; coverage=83.333; evalue=7.48e-46; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0045893	positive regulation of DNA-templated transcription	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=41.277; coverage=83.333; evalue=7.48e-46; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0045944	positive regulation of transcription by RNA polymerase II	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=52.299; coverage=61.702; evalue=4.47e-51; UniProt GO evidence=IEA:InterPro	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0048577	negative regulation of short-day photoperiodism, flowering	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=42.339; coverage=87.943; evalue=3.97e-49; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0048586	regulation of long-day photoperiodism, flowering	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=42.678; coverage=84.752; evalue=7.15e-46; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0060862	negative regulation of floral organ abscission	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=41.277; coverage=83.333; evalue=7.48e-46; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0060867	fruit abscission	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=41.277; coverage=83.333; evalue=7.48e-46; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0071365	cellular response to auxin stimulus	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=41.277; coverage=83.333; evalue=7.48e-46; UniProt GO evidence=IEP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:2000692	negative regulation of seed maturation	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=41.277; coverage=83.333; evalue=7.48e-46; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005634	nucleus	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=52.299; coverage=61.702; evalue=4.47e-51; UniProt GO evidence=IEA:UniProtKB-SubCell	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005737	cytoplasm	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=41.277; coverage=83.333; evalue=7.48e-46; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0000976	transcription cis-regulatory region binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=42.339; coverage=87.943; evalue=3.97e-49; UniProt GO evidence=IPI:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0000977	RNA polymerase II transcription regulatory region sequence-specific DNA binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=52.299; coverage=61.702; evalue=4.47e-51; UniProt GO evidence=IEA:InterPro	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0000978	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=42.339; coverage=87.943; evalue=3.97e-49; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0000981	DNA-binding transcription factor activity, RNA polymerase II-specific	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=42.339; coverage=87.943; evalue=3.97e-49; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0003677	DNA binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=41.277; coverage=83.333; evalue=7.48e-46; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0003700	DNA-binding transcription factor activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=52.299; coverage=61.702; evalue=4.47e-51; UniProt GO evidence=IEA:InterPro	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0042803	protein homodimerization activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=42.678; coverage=84.752; evalue=7.15e-46; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0043565	sequence-specific DNA binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=41.277; coverage=83.333; evalue=7.48e-46; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0046983	protein dimerization activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=52.299; coverage=61.702; evalue=4.47e-51; UniProt GO evidence=IEA:InterPro	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT3G57230	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=42.678; coverage=84.752; evalue=7.15e-46	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT3G57390	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=42.339; coverage=87.943; evalue=3.97e-49	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT5G13790	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=41.277; coverage=83.333; evalue=7.48e-46	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	dosa:Os02g0579600	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=38.71; coverage=87.943; evalue=4.72e-44	UniProtKB/Swiss-Prot DAT 2026 current_release