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Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene IDLXL04_038500
Query referenceOH1004
LocationChr09:42519467-42523621 (-)
DescriptionSimilar to POLK: DNA polymerase kappa (Arabidopsis thaliana OX%3D3702)
Annotation source assemblyGCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_038500 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 21 GO annotations and 4 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g49980 Template-directed low-fidelity DNA polymerase specifically involved in DNA repair.
Arabidopsis thaliana AtPOLK encodes a DinB-like DNA polymerase that extends mispaired primer termini and is highly expressed in a variety of tissues.2004 · DOI: 10.1111/j.1365-313x.2004.02112.x
The noncatalytic C-terminus of AtPOLK Y-family DNA polymerase affects synthesis fidelity, mismatch extension and translesion replication.2007 · DOI: 10.1111/j.1742-4658.2007.05868.x

Rice

No hit for this species in the current source table.

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

TypeIDNameNamespaceEvidenceSource
GOGO:0000731DNA synthesis involved in DNA repairBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=37.017; coverage=59.442; evalue=6.45e-62; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0006261DNA-templated DNA replicationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=37.017; coverage=59.442; evalue=6.45e-62; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0006281DNA repairBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=70.122; coverage=80.788; evalue=0.0; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0006974DNA damage responseBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=37.529; coverage=70.443; evalue=9.26e-89; UniProt GO evidence=IMP:PomBaseUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009432SOS responseBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=37.017; coverage=59.442; evalue=6.45e-62; UniProt GO evidence=IEA:TreeGrafterUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0019985translesion synthesisBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=37.529; coverage=70.443; evalue=9.26e-89; UniProt GO evidence=IMP:PomBaseUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0042276error-prone translesion synthesisBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=70.122; coverage=80.788; evalue=0.0; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0051321meiotic cell cycleBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=37.529; coverage=70.443; evalue=9.26e-89; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0070987error-free translesion synthesisBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=37.529; coverage=70.443; evalue=9.26e-89; UniProt GO evidence=IMP:PomBaseUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0000785chromatinCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=37.529; coverage=70.443; evalue=9.26e-89; UniProt GO evidence=IDA:PomBaseUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005634nucleusCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=70.122; coverage=80.788; evalue=0.0; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005737cytoplasmCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=70.122; coverage=80.788; evalue=0.0; UniProt GO evidence=ISM:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005829cytosolCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=37.529; coverage=70.443; evalue=9.26e-89; UniProt GO evidence=HDA:PomBaseUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009507chloroplastCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=70.122; coverage=80.788; evalue=0.0; UniProt GO evidence=ISM:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0000287magnesium ion bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=37.017; coverage=59.442; evalue=6.45e-62; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0003684damaged DNA bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=70.122; coverage=80.788; evalue=0.0; UniProt GO evidence=IEA:InterProUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0003690double-stranded DNA bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=37.017; coverage=59.442; evalue=6.45e-62; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0003697single-stranded DNA bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=70.122; coverage=80.788; evalue=0.0; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0003887DNA-directed DNA polymerase activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=70.122; coverage=80.788; evalue=0.0; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0008270zinc ion bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=70.122; coverage=80.788; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0032356oxidized DNA bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=37.017; coverage=59.442; evalue=6.45e-62; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT1G49980KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=70.122; coverage=80.788; evalue=0.0UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGcel:CELE_F22B7.6KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=37.712; coverage=77.504; evalue=7.04e-81UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGspo:2539547KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=37.529; coverage=70.443; evalue=9.26e-89UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGtte:TTE0254KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=37.017; coverage=59.442; evalue=6.45e-62UniProtKB/Swiss-Prot DAT 2026 current_release