Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene ID	`LXL04_036736`
Query reference	OH1004
Location	Chr08:47549467-47550654 (+)
Description	Similar to CHGG_01239: PKS-NRPS hybrid synthetase CHGG_01239 (Chaetomium globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 6347 / NRRL 1970) OX%3D306901)
Annotation source assembly	GCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_036736 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 25 GO annotations and 4 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g22170`	Transcription activator that recognizes and binds to the DNA consensus sequence 5'-CACGCGC-3'.	Arabidopsis FHY3 defines a key phytochrome A signaling component directly interacting with its homologous partner FAR1.2002 · DOI: 10.1093/emboj/21.6.1339 The FHY3 and FAR1 genes encode transposase-related proteins involved in regulation of gene expression by the phytochrome A-signaling pathway.2003 · DOI: 10.1046/j.1365-313x.2003.01741.x Arabidopsis FHY3 specifically gates phytochrome signaling to the circadian clock.2006 · DOI: 10.1105/tpc.105.037358 Transposase-derived transcription factors regulate light signaling in Arabidopsis.2007 · DOI: 10.1126/science.1146281 Discrete and essential roles of the multiple domains of Arabidopsis FHY3 in mediating phytochrome A signal transduction.2008 · DOI: 10.1104/pp.108.120436 Transposase-derived proteins FHY3/FAR1 interact with PHYTOCHROME-INTERACTING FACTOR1 to regulate chlorophyll biosynthesis by modulating HEMB1 during deetiolation in Arabidopsis.2012 · DOI: 10.1105/tpc.112.097022
`At1g76320`	Putative transcription activator involved in regulating light control of development.	No verified direct reference in this release
`At4g38180`	Putative transcription activator involved in regulating light control of development.	No verified direct reference in this release
`At4g15090`	Transcription activator that recognizes and binds to the DNA consensus sequence 5'-CACGCGC-3'.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

Type	ID	Name	Namespace	Evidence	Source
GO	GO:0006351	DNA-templated transcription	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=20.067; coverage=93.438; evalue=3.98e-07; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0006355	regulation of DNA-templated transcription	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=21.533; coverage=85.625; evalue=7.41e-07; UniProt GO evidence=IEA:InterPro	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0006633	fatty acid biosynthetic process	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=23.482; coverage=77.188; evalue=4.34e-11; UniProt GO evidence=IEA:InterPro	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0007623	circadian rhythm	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=20.067; coverage=93.438; evalue=3.98e-07; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009403	toxin biosynthetic process	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=23.482; coverage=77.188; evalue=4.34e-11; UniProt GO evidence=IEA:UniProtKB-ARBA	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009585	red, far-red light phototransduction	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=20.067; coverage=93.438; evalue=3.98e-07; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009639	response to red or far red light	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=23.986; coverage=92.5; evalue=2.49e-06; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010017	red or far-red light signaling pathway	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=20.067; coverage=93.438; evalue=3.98e-07; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010018	far-red light signaling pathway	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=23.986; coverage=92.5; evalue=2.49e-06; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010218	response to far red light	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=20.067; coverage=93.438; evalue=3.98e-07; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0032259	methylation	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=23.482; coverage=77.188; evalue=4.34e-11; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0042753	positive regulation of circadian rhythm	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=20.067; coverage=93.438; evalue=3.98e-07; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0045893	positive regulation of DNA-templated transcription	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=20.067; coverage=93.438; evalue=3.98e-07; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:1900056	negative regulation of leaf senescence	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=20.067; coverage=93.438; evalue=3.98e-07; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005634	nucleus	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=20.067; coverage=93.438; evalue=3.98e-07; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0001228	DNA-binding transcription activator activity, RNA polymerase II-specific	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=20.067; coverage=93.438; evalue=3.98e-07; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0003700	DNA-binding transcription factor activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=20.067; coverage=93.438; evalue=3.98e-07; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0004312	fatty acid synthase activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=23.482; coverage=77.188; evalue=4.34e-11; UniProt GO evidence=IEA:TreeGrafter	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0004315	3-oxoacyl-[acyl-carrier-protein] synthase activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=23.482; coverage=77.188; evalue=4.34e-11; UniProt GO evidence=IEA:InterPro	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0008168	methyltransferase activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=23.482; coverage=77.188; evalue=4.34e-11; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0008270	zinc ion binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=20.067; coverage=93.438; evalue=3.98e-07; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0016491	oxidoreductase activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=23.482; coverage=77.188; evalue=4.34e-11; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0016853	isomerase activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=23.482; coverage=77.188; evalue=4.34e-11; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0016874	ligase activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=23.482; coverage=77.188; evalue=4.34e-11; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0031177	phosphopantetheine binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=23.482; coverage=77.188; evalue=4.34e-11; UniProt GO evidence=IEA:InterPro	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT1G76320	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=21.533; coverage=85.625; evalue=7.41e-07	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT3G22170	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=20.067; coverage=93.438; evalue=3.98e-07	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT4G15090	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=23.986; coverage=92.5; evalue=2.49e-06	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT4G38180	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=20.472; coverage=79.375; evalue=2.25e-06	UniProtKB/Swiss-Prot DAT 2026 current_release