Gene Annotation
Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.
Search Results
| Gene ID | LXL04_034820 |
|---|---|
| Query reference | OH1004 |
| Location | Chr08:3339679-3344212 (-) |
| Description | Similar to NRPD2: DNA-directed RNA polymerases IV and V subunit 2 (Arabidopsis thaliana OX%3D3702) |
| Annotation source assembly | GCA_047496595.1_OSU_TarKok_2.0 |
Functional annotation source: OH1004 · LXL04_034820 · GCA_047496595.1_OSU_TarKok_2.0.
This query returns 23 GO annotations and 4 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.
Arabidopsis / Rice Reference Genes and Papers
Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.
Download references for this gene
Arabidopsis
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
At3g23780 |
DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. |
Atypical RNA polymerase subunits required for RNA-directed DNA methylation.2005 · DOI: 10.1038/ng1580
|
At3g18090 |
DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | No verified direct reference in this release |
At4g21710 |
DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | No verified direct reference in this release |
Rice
No hit for this species in the current source table.
GO / KEGG
These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.
| Type | ID | Name | Namespace | Evidence | Source |
|---|---|---|---|---|---|
| GO | GO:0006354 | DNA-templated transcription elongation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=63.015; coverage=99.753; evalue=0.0; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006366 | transcription by RNA polymerase II | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=34.069; coverage=100.575; evalue=0.0; UniProt GO evidence=ISS:dictyBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006367 | transcription initiation at RNA polymerase II promoter | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=63.015; coverage=99.753; evalue=0.0; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0030422 | siRNA processing | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=63.015; coverage=99.753; evalue=0.0; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0031047 | regulatory ncRNA-mediated gene silencing | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=63.015; coverage=99.753; evalue=0.0; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0031507 | heterochromatin formation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=63.015; coverage=99.753; evalue=0.0; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0035194 | regulatory ncRNA-mediated post-transcriptional gene silencing | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=63.015; coverage=99.753; evalue=0.0; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0035196 | miRNA processing | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=33.95; coverage=102.136; evalue=0.0; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0050776 | regulation of immune response | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=63.015; coverage=99.753; evalue=0.0; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0050832 | defense response to fungus | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=63.015; coverage=99.753; evalue=0.0; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0080188 | gene silencing by siRNA-directed DNA methylation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=63.015; coverage=99.753; evalue=0.0; UniProt GO evidence=IMP:FlyBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0141007 | transposable element silencing by siRNA-mediated heterochromatin formation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=63.015; coverage=99.753; evalue=0.0; UniProt GO evidence=IMP:FlyBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000418 | RNA polymerase IV complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=63.015; coverage=99.753; evalue=0.0; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000419 | RNA polymerase V complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=63.015; coverage=99.753; evalue=0.0; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000792 | heterochromatin | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=63.015; coverage=99.753; evalue=0.0; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005634 | nucleus | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=63.015; coverage=99.753; evalue=0.0; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005665 | RNA polymerase II, core complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=63.015; coverage=99.753; evalue=0.0; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009506 | plasmodesma | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=33.95; coverage=102.136; evalue=0.0; UniProt GO evidence=HDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0030880 | RNA polymerase complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=63.015; coverage=99.753; evalue=0.0; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003677 | DNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=63.015; coverage=99.753; evalue=0.0; UniProt GO evidence=IEA:InterPro | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003899 | DNA-directed RNA polymerase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=63.015; coverage=99.753; evalue=0.0; UniProt GO evidence=ISS:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0008270 | zinc ion binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=63.015; coverage=99.753; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0032549 | ribonucleoside binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=63.015; coverage=99.753; evalue=0.0; UniProt GO evidence=IEA:InterPro | UniProtKB/Swiss-Prot DAT 2026 current_release |
| KEGG | ath:AT3G18090 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=65.275; coverage=86.606; evalue=0.0 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ath:AT3G23780 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=63.015; coverage=99.753; evalue=0.0 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ath:AT4G21710 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=33.95; coverage=102.136; evalue=0.0 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ddi:DDB_G0288257 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=34.069; coverage=100.575; evalue=0.0 | UniProtKB/Swiss-Prot DAT 2026 current_release |