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Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene IDLXL04_033089
Query referenceOH1004
LocationChr07:35721103-35725853 (-)
DescriptionSimilar to SIZ1: E3 SUMO-protein ligase SIZ1 (Arabidopsis thaliana OX%3D3702)
Annotation source assemblyGCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_033089 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 36 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g60410 E3 SUMO protein ligase involved in regulation processes.
The Arabidopsis SUMO E3 ligase SIZ1 controls phosphate deficiency responses.2005 · DOI: 10.1073/pnas.0500778102
SIZ1 small ubiquitin-like modifier E3 ligase facilitates basal thermotolerance in Arabidopsis independent of salicylic acid.2006 · DOI: 10.1104/pp.106.088831
Salicylic acid-mediated innate immunity in Arabidopsis is regulated by SIZ1 SUMO E3 ligase.2007 · DOI: 10.1111/j.1365-313x.2006.02947.x
SIZ1-mediated sumoylation of ICE1 controls CBF3/DREB1A expression and freezing tolerance in Arabidopsis.2007 · DOI: 10.1105/tpc.106.048397
Genetic analysis of SUMOylation in Arabidopsis: conjugation of SUMO1 and SUMO2 to nuclear proteins is essential.2007 · DOI: 10.1104/pp.107.102285
The Arabidopsis E3 SUMO ligase SIZ1 regulates plant growth and drought responses.2007 · DOI: 10.1105/tpc.106.049981
The PHD domain of plant PIAS proteins mediates sumoylation of bromodomain GTE proteins.2008 · DOI: 10.1074/jbc.m708176200
Sumoylation of ABI5 by the Arabidopsis SUMO E3 ligase SIZ1 negatively regulates abscisic acid signaling.2009 · DOI: 10.1073/pnas.0811088106
SUMOylation represses SnRK1 signaling in Arabidopsis.2016 · DOI: 10.1111/tpj.13096

Rice

Reference gene IDPossible functionPapers / DOI
Os05g0125000 Probable SUMO E3 ligase that may regulate Pi starvation responses. No verified direct reference in this release
Os03g0719100 Probable SUMO E3 ligase that may regulate Pi starvation responses. No verified direct reference in this release

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

TypeIDNameNamespaceEvidenceSource
GOGO:0002758innate immune response-activating signaling pathwayBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=56.384; coverage=108.191; evalue=0.0; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0006351DNA-templated transcriptionBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=24.016; coverage=31.051; evalue=1.67e-14; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0006357regulation of transcription by RNA polymerase IIBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=24.303; coverage=30.685; evalue=1.61e-14; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0006952defense responseBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=56.384; coverage=108.191; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009414response to water deprivationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=56.384; coverage=108.191; evalue=0.0; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009553embryo sac developmentBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=56.384; coverage=108.191; evalue=0.0; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009787regulation of abscisic acid-activated signaling pathwayBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=56.384; coverage=108.191; evalue=0.0; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009826unidimensional cell growthBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=56.384; coverage=108.191; evalue=0.0; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009910negative regulation of flower developmentBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=56.384; coverage=108.191; evalue=0.0; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0010113negative regulation of systemic acquired resistanceBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=56.384; coverage=108.191; evalue=0.0; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0010183pollen tube guidanceBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=56.384; coverage=108.191; evalue=0.0; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0010247detection of phosphate ionBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=56.384; coverage=108.191; evalue=0.0; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0010286heat acclimationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=56.384; coverage=108.191; evalue=0.0; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0010337regulation of salicylic acid metabolic processBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=56.384; coverage=108.191; evalue=0.0; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0016036cellular response to phosphate starvationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=56.384; coverage=108.191; evalue=0.0; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0016925protein sumoylationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=56.384; coverage=108.191; evalue=0.0; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0040008regulation of growthBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=56.384; coverage=108.191; evalue=0.0; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0045944positive regulation of transcription by RNA polymerase IIBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=24.303; coverage=30.685; evalue=1.61e-14; UniProt GO evidence=ISS:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0048481plant ovule developmentBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=56.384; coverage=108.191; evalue=0.0; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0048589developmental growthBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=56.384; coverage=108.191; evalue=0.0; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0050826response to freezingBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=56.384; coverage=108.191; evalue=0.0; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0051301cell divisionBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=56.384; coverage=108.191; evalue=0.0; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0062210shoot regenerationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=56.384; coverage=108.191; evalue=0.0; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0090352regulation of nitrate assimilationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=56.384; coverage=108.191; evalue=0.0; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:2000070regulation of response to water deprivationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=56.384; coverage=108.191; evalue=0.0; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0000785chromatinCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=56.384; coverage=108.191; evalue=0.0; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005634nucleusCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=56.384; coverage=108.191; evalue=0.0; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005654nucleoplasmCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=24.303; coverage=30.685; evalue=1.61e-14; UniProt GO evidence=ISO:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005739mitochondrionCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=24.303; coverage=30.685; evalue=1.61e-14; UniProt GO evidence=ISO:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0016607nuclear speckCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=56.384; coverage=108.191; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-SubCellUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0043596nuclear replication forkCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=24.303; coverage=30.685; evalue=1.61e-14; UniProt GO evidence=ISS:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0003713transcription coactivator activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=24.303; coverage=30.685; evalue=1.61e-14; UniProt GO evidence=ISS:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0008270zinc ion bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=56.384; coverage=108.191; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0019789SUMO transferase activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=56.384; coverage=108.191; evalue=0.0; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0032183SUMO bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=56.384; coverage=108.191; evalue=0.0; UniProt GO evidence=IPI:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0061665SUMO ligase activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=56.384; coverage=108.191; evalue=0.0; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT5G60410KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=56.384; coverage=108.191; evalue=0.0UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGdosa:Os03g0719100KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=50.366; coverage=83.496; evalue=0.0UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGdosa:Os05g0125000KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=47.263; coverage=109.413; evalue=0.0UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGhsa:83637KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=24.016; coverage=31.051; evalue=1.67e-14UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGmmu:52915KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=24.303; coverage=30.685; evalue=1.61e-14UniProtKB/Swiss-Prot DAT 2026 current_release