Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene ID	`LXL04_031237`
Query reference	OH1004
Location	Chr07:2981431-2982030 (-)
Description	Similar to AGL29: Agamous-like MADS-box protein AGL29 (Arabidopsis thaliana OX%3D3702)
Annotation source assembly	GCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_031237 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 17 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g24840`	Probable transcription factor.	AGL61 interacts with AGL80 and is required for central cell development in Arabidopsis.2008 · DOI: 10.1104/pp.108.119404 The MADS domain protein DIANA acts together with AGAMOUS-LIKE80 to specify the central cell in Arabidopsis ovules.2008 · DOI: 10.1105/tpc.108.058958
`At2g34440`	Probable transcription factor.	No verified direct reference in this release
`At5g60440`	Probable transcription factor.	The AGL62 MADS domain protein regulates cellularization during endosperm development in Arabidopsis.2008 · DOI: 10.1105/tpc.107.055137
`At5g51870`	MADS-box transcription factor that acts with AGL42 and AGL72 in the control of flowering time.	The Arabidopsis SOC1-like genes AGL42, AGL71 and AGL72 promote flowering in the shoot apical and axillary meristems.2011 · DOI: 10.1111/j.1365-313x.2011.04653.x
`At1g65360`	Probable transcription factor that controls female gametophyte (megagametogenesis) development and chloroplast biogenesis during embryo development.	AGL23, a type I MADS-box gene that controls female gametophyte and embryo development in Arabidopsis.2008 · DOI: 10.1111/j.1365-313x.2008.03485.x

Rice

No hit for this species in the current source table.

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

Type	ID	Name	Namespace	Evidence	Source
GO	GO:0006351	DNA-templated transcription	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=34.524; coverage=84.422; evalue=1.83e-26; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0006357	regulation of transcription by RNA polymerase II	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=34.524; coverage=84.422; evalue=1.83e-26; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009553	embryo sac development	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=41.176; coverage=59.799; evalue=3.14e-17; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009559	embryo sac central cell differentiation	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=34.659; coverage=88.442; evalue=5.52e-26; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009658	chloroplast organization	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=41.176; coverage=59.799; evalue=3.14e-17; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009908	flower development	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=36.0; coverage=75.377; evalue=1.46e-18; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009909	regulation of flower development	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=36.0; coverage=75.377; evalue=1.46e-18; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009960	endosperm development	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=34.225; coverage=93.97; evalue=3.22e-22; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0030154	cell differentiation	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=36.0; coverage=75.377; evalue=1.46e-18; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0045944	positive regulation of transcription by RNA polymerase II	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=34.659; coverage=88.442; evalue=5.52e-26; UniProt GO evidence=IEA:InterPro	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:2000012	regulation of auxin polar transport	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=34.225; coverage=93.97; evalue=3.22e-22; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005634	nucleus	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=34.524; coverage=84.422; evalue=1.83e-26; UniProt GO evidence=ISM:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0043078	polar nucleus	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=34.659; coverage=88.442; evalue=5.52e-26; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0000978	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=34.524; coverage=84.422; evalue=1.83e-26; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0000981	DNA-binding transcription factor activity, RNA polymerase II-specific	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=34.524; coverage=84.422; evalue=1.83e-26; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0003700	DNA-binding transcription factor activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=34.524; coverage=84.422; evalue=1.83e-26; UniProt GO evidence=ISS:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0046983	protein dimerization activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=34.524; coverage=84.422; evalue=1.83e-26; UniProt GO evidence=IEA:InterPro	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT1G65360	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=41.176; coverage=59.799; evalue=3.14e-17	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT2G24840	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=34.659; coverage=88.442; evalue=5.52e-26	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT2G34440	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=34.524; coverage=84.422; evalue=1.83e-26	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT5G51870	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=36.0; coverage=75.377; evalue=1.46e-18	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT5G60440	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=34.225; coverage=93.97; evalue=3.22e-22	UniProtKB/Swiss-Prot DAT 2026 current_release