Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene ID	`LXL04_030727`
Query reference	OH1004
Location	Chr06:121498536-121507634 (+)
Description	Similar to KNAT6: Homeobox protein knotted-1-like 6 (Arabidopsis thaliana OX%3D3702)
Annotation source assembly	GCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_030727 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 16 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g23380`	Plays a role in meristem function.	KNAT6: an Arabidopsis homeobox gene involved in meristem activity and organ separation.2006 · DOI: 10.1105/tpc.106.041988
`At1g70510`	May play a role in meristem function, and may be involved in maintaining cells in an undifferentiated, meristematic state.	No verified direct reference in this release
`At4g08150`	May play a role in meristem function, and may be involved in maintaining cells in an undifferentiated, meristematic state, and its expression disappears at the same time the shoot apex undergoes the transition from vegetative to reproductive development.	ASYMMETRIC LEAVES1 reveals knox gene redundancy in Arabidopsis.2002 · DOI: 10.1242/dev.129.8.1957 Developmental regulation and significance of KNOX protein trafficking in Arabidopsis.2003 · DOI: 10.1242/dev.00618 A knotted1-like homeobox gene in Arabidopsis is expressed in the vegetative meristem and dramatically alters leaf morphology when overexpressed in transgenic plants.1994 · DOI: 10.1105/tpc.6.12.1859

Rice

Reference gene ID	Possible function	Papers / DOI
`Os01g0302500`	Probable transcription factor that may be involved in shoot formation during early embryogenesis.	No verified direct reference in this release

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

Type	ID	Name	Namespace	Evidence	Source
GO	GO:0001708	cell fate specification	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=54.959; coverage=78.065; evalue=3.08e-77; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0006351	DNA-templated transcription	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=56.118; coverage=76.452; evalue=3.85e-77; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0006357	regulation of transcription by RNA polymerase II	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=58.273; coverage=89.677; evalue=1.44e-102; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009736	cytokinin-activated signaling pathway	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=60.643; coverage=80.323; evalue=7.77e-97; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009888	tissue development	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=56.118; coverage=76.452; evalue=3.85e-77; UniProt GO evidence=IEA:UniProtKB-ARBA	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010051	xylem and phloem pattern formation	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=54.959; coverage=78.065; evalue=3.08e-77; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010073	meristem maintenance	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=58.273; coverage=89.677; evalue=1.44e-102; UniProt GO evidence=IGI:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010089	xylem development	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=54.959; coverage=78.065; evalue=3.08e-77; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010094	specification of carpel identity	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=60.643; coverage=80.323; evalue=7.77e-97; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0045165	cell fate commitment	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=54.959; coverage=78.065; evalue=3.08e-77; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005634	nucleus	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=58.273; coverage=89.677; evalue=1.44e-102; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0000976	transcription cis-regulatory region binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=58.273; coverage=89.677; evalue=1.44e-102; UniProt GO evidence=IPI:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0000978	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=58.273; coverage=89.677; evalue=1.44e-102; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0000981	DNA-binding transcription factor activity, RNA polymerase II-specific	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=58.273; coverage=89.677; evalue=1.44e-102; UniProt GO evidence=IEA:InterPro	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0003700	DNA-binding transcription factor activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=58.273; coverage=89.677; evalue=1.44e-102; UniProt GO evidence=ISS:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0042802	identical protein binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=54.959; coverage=78.065; evalue=3.08e-77; UniProt GO evidence=IPI:IntAct	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT1G23380	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=58.273; coverage=89.677; evalue=1.44e-102	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT1G70510	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=60.643; coverage=80.323; evalue=7.77e-97	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT4G08150	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=54.959; coverage=78.065; evalue=3.08e-77	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	dosa:Os01g0302500	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=52.61; coverage=80.323; evalue=3.71e-82	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	gmx:547796	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=56.118; coverage=76.452; evalue=3.85e-77	UniProtKB/Swiss-Prot DAT 2026 current_release