Gene Annotation
Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.
Search Results
| Gene ID | LXL04_029650 |
|---|---|
| Query reference | OH1004 |
| Location | Chr06:96209827-96214354 (+) |
| Description | Similar to VIP2: Probable NOT transcription complex subunit VIP2 (Fragment) (Nicotiana benthamiana OX%3D4100) |
| Annotation source assembly | GCA_047496595.1_OSU_TarKok_2.0 |
Functional annotation source: OH1004 · LXL04_029650 · GCA_047496595.1_OSU_TarKok_2.0.
This query returns 26 GO annotations and 4 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.
Arabidopsis / Rice Reference Genes and Papers
Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.
Download references for this gene
Arabidopsis
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
At5g59710 |
Transcriptional regulator required for Agrobacterium-mediated stable genetic transformation by T-DNA integration in host genome, but not for T-DNA transient expression. | No verified direct reference in this release |
Rice
No hit for this species in the current source table.
GO / KEGG
These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.
| Type | ID | Name | Namespace | Evidence | Source |
|---|---|---|---|---|---|
| GO | GO:0000122 | negative regulation of transcription by RNA polymerase II | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=44.944; coverage=31.065; evalue=1.28e-40; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000289 | nuclear-transcribed mRNA poly(A) tail shortening | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=48.892; coverage=110.297; evalue=4.3e-167; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006351 | DNA-templated transcription | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=51.555; coverage=106.632; evalue=4.82e-168; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006355 | regulation of DNA-templated transcription | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=51.555; coverage=106.632; evalue=4.82e-168; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006357 | regulation of transcription by RNA polymerase II | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=44.944; coverage=31.065; evalue=1.28e-40; UniProt GO evidence=NAS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006417 | regulation of translation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=44.944; coverage=31.065; evalue=1.28e-40; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0010606 | positive regulation of cytoplasmic mRNA processing body assembly | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=44.944; coverage=31.065; evalue=1.28e-40; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0015074 | DNA integration | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=51.555; coverage=106.632; evalue=4.82e-168; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0031047 | regulatory ncRNA-mediated gene silencing | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=44.944; coverage=31.065; evalue=1.28e-40; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0032968 | positive regulation of transcription elongation by RNA polymerase II | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=40.556; coverage=31.414; evalue=2.21e-37; UniProt GO evidence=NAS:ComplexPortal | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0033147 | negative regulation of intracellular estrogen receptor signaling pathway | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=44.944; coverage=31.065; evalue=1.28e-40; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:2000036 | regulation of stem cell population maintenance | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=44.944; coverage=31.065; evalue=1.28e-40; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000932 | P-body | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=48.892; coverage=110.297; evalue=4.3e-167; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005634 | nucleus | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=51.555; coverage=106.632; evalue=4.82e-168; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005654 | nucleoplasm | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=44.944; coverage=31.065; evalue=1.51e-40; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005737 | cytoplasm | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=44.944; coverage=31.065; evalue=1.28e-40; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005829 | cytosol | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=44.944; coverage=31.065; evalue=1.28e-40; UniProt GO evidence=TAS:Reactome | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005886 | plasma membrane | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=44.944; coverage=31.065; evalue=1.51e-40; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009507 | chloroplast | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=48.892; coverage=110.297; evalue=4.3e-167; UniProt GO evidence=ISM:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0016020 | membrane | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=44.944; coverage=31.065; evalue=1.28e-40; UniProt GO evidence=HDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0030014 | CCR4-NOT complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=44.944; coverage=31.065; evalue=1.28e-40; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0030015 | CCR4-NOT core complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=51.555; coverage=106.632; evalue=4.82e-168; UniProt GO evidence=IEA:InterPro | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0001222 | transcription corepressor binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=44.944; coverage=31.065; evalue=1.28e-40; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003712 | transcription coregulator activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=44.944; coverage=31.065; evalue=1.28e-40; UniProt GO evidence=TAS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003729 | mRNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=48.892; coverage=110.297; evalue=4.3e-167; UniProt GO evidence=HDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0004535 | poly(A)-specific ribonuclease activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=44.944; coverage=31.065; evalue=1.51e-40; UniProt GO evidence=IEA:Ensembl | UniProtKB/Swiss-Prot DAT 2026 current_release |
| KEGG | ath:AT5G59710 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=48.892; coverage=110.297; evalue=4.3e-167 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | hsa:4848 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=44.944; coverage=31.065; evalue=1.28e-40 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | mmu:72068 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=44.944; coverage=31.065; evalue=1.51e-40 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | spo:2538778 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=40.556; coverage=31.414; evalue=2.21e-37 | UniProtKB/Swiss-Prot DAT 2026 current_release |