Gene Annotation
Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.
Search Results
| Gene ID | LXL04_027841 |
|---|---|
| Query reference | OH1004 |
| Location | Chr06:24608189-24609317 (-) |
| Description | Similar to VIP3: WD repeat-containing protein VIP3 (Arabidopsis thaliana OX%3D3702) |
| Annotation source assembly | GCA_047496595.1_OSU_TarKok_2.0 |
Functional annotation source: OH1004 · LXL04_027841 · GCA_047496595.1_OSU_TarKok_2.0.
This query returns 16 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.
Arabidopsis / Rice Reference Genes and Papers
Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.
Download references for this gene
Arabidopsis
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
At4g29830 |
Component of the PAF1 complex (PAF1C) which is involved in histone modifications such as methylation on histone H3 'Lys-4' (H3K4me3). |
Genetic analysis of early flowering mutants in Arabidopsis defines a class of pleiotropic developmental regulator required for expression of the flowering-time switch flowering locus C.2003 · DOI: 10.1093/genetics/164.1.347 Non conservation of the meiotic function of the Ski8/Rec103 homolog in Arabidopsis.2006 · DOI: 10.1111/j.1365-2443.2006.00972.x
|
Rice
No hit for this species in the current source table.
GO / KEGG
These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.
| Type | ID | Name | Namespace | Evidence | Source |
|---|---|---|---|---|---|
| GO | GO:0006351 | DNA-templated transcription | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=74.766; coverage=100.312; evalue=3.71e-176; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006368 | transcription elongation by RNA polymerase II | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=37.975; coverage=98.75; evalue=7.44e-68; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009908 | flower development | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=74.766; coverage=100.312; evalue=3.71e-176; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009910 | negative regulation of flower development | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=74.766; coverage=100.312; evalue=3.71e-176; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0016441 | post-transcriptional gene silencing | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=74.766; coverage=100.312; evalue=3.71e-176; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0070478 | nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic nonsense-mediated decay | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=37.975; coverage=98.75; evalue=7.44e-68; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0072344 | rescue of stalled cytosolic ribosome | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=37.975; coverage=98.75; evalue=7.44e-68; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:1904278 | positive regulation of wax biosynthetic process | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=74.766; coverage=100.312; evalue=3.71e-176; UniProt GO evidence=IGI:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000791 | euchromatin | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=37.975; coverage=98.75; evalue=7.44e-68; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005634 | nucleus | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=74.766; coverage=100.312; evalue=3.71e-176; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005737 | cytoplasm | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=74.766; coverage=100.312; evalue=3.71e-176; UniProt GO evidence=ISM:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005829 | cytosol | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=74.766; coverage=100.312; evalue=3.71e-176; UniProt GO evidence=HDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005886 | plasma membrane | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=74.766; coverage=100.312; evalue=3.71e-176; UniProt GO evidence=HDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0016593 | Cdc73/Paf1 complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=74.766; coverage=100.312; evalue=3.71e-176; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0055087 | Ski complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=37.975; coverage=98.75; evalue=7.44e-68; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0080008 | Cul4-RING E3 ubiquitin ligase complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=74.766; coverage=100.312; evalue=3.71e-176; UniProt GO evidence=IPI:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| KEGG | ath:AT4G29830 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=74.766; coverage=100.312; evalue=3.71e-176 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | dre:393827 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=37.975; coverage=98.75; evalue=7.44e-68 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | gga:415359 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=39.557; coverage=98.75; evalue=1.77e-64 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | xla:444484 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=39.365; coverage=98.438; evalue=4.52e-64 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | xtr:394466 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=39.683; coverage=98.438; evalue=1.17e-65 | UniProtKB/Swiss-Prot DAT 2026 current_release |