Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene ID	`LXL04_027647`
Query reference	OH1004
Location	Chr06:21002522-21003661 (+)
Description	Similar to NAC078: NAC domain-containing protein 78 (Arabidopsis thaliana OX%3D3702)
Annotation source assembly	GCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_027647 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 31 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g04410`	Transcriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP) (By similarity).	No verified direct reference in this release
`At5g09330`	Transcriptional regulator that binds specific DNA sequences on the promoter regions of target genes.	No verified direct reference in this release
`At3g10500`	Transcriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP).	A NAC transcription factor NTL4 promotes reactive oxygen species production during drought-induced leaf senescence in Arabidopsis.2012 · DOI: 10.1111/j.1365-313x.2012.04932.x The Arabidopsis NAC transcription factor NTL4 participates in a positive feedback loop that induces programmed cell death under heat stress conditions.2014 · DOI: 10.1016/j.plantsci.2014.07.003
`At3g10490`	Transcriptional repressor that binds to the motif 5'- (C/T)A(C/A)G-3' in the promoter of target genes.	Two novel NAC transcription factors regulate gene expression and flowering time by associating with the histone demethylase JMJ14.2015 · DOI: 10.1093/nar/gku1382 C-terminal domains of a histone demethylase interact with a pair of transcription factors and mediate specific chromatin association.2015 · DOI: 10.1038/celldisc.2015.3

Rice

Reference gene ID	Possible function	Papers / DOI
`Os03g0119966`	Transcription factor that functions as a regulator of the jasmonate (JA) signaling pathway.	Disruption of a novel gene for a NAC-domain protein in rice confers resistance to Rice dwarf virus.2009 · DOI: 10.1111/j.1365-313x.2008.03712.x The NAC transcription factor RIM1 of rice is a new regulator of jasmonate signaling.2010 · DOI: 10.1111/j.1365-313x.2009.04107.x

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

Type	ID	Name	Namespace	Evidence	Source
GO	GO:0000122	negative regulation of transcription by RNA polymerase II	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=48.333; coverage=60.403; evalue=2.64e-51; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0002237	response to molecule of bacterial origin	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=48.333; coverage=60.403; evalue=2.64e-51; UniProt GO evidence=IEP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0006351	DNA-templated transcription	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=53.179; coverage=58.054; evalue=4.7e-58; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0006355	regulation of DNA-templated transcription	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=52.174; coverage=54.027; evalue=7.52e-53; UniProt GO evidence=IEA:InterPro	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0006952	defense response	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=48.333; coverage=60.403; evalue=2.64e-51; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009555	pollen development	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=48.333; coverage=60.403; evalue=2.64e-51; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009644	response to high light intensity	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=53.179; coverage=58.054; evalue=4.7e-58; UniProt GO evidence=IEP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009738	abscisic acid-activated signaling pathway	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=52.174; coverage=54.027; evalue=7.52e-53; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009819	drought recovery	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=54.878; coverage=55.034; evalue=1.92e-56; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009908	flower development	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=48.333; coverage=60.403; evalue=2.64e-51; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009962	regulation of flavonoid biosynthetic process	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=53.179; coverage=58.054; evalue=4.7e-58; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010150	leaf senescence	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=54.878; coverage=55.034; evalue=1.92e-56; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010228	vegetative to reproductive phase transition of meristem	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=48.333; coverage=60.403; evalue=2.64e-51; UniProt GO evidence=IGI:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010267	ta-siRNA processing	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=48.333; coverage=60.403; evalue=2.64e-51; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0016441	post-transcriptional gene silencing	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=48.333; coverage=60.403; evalue=2.64e-51; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0045814	negative regulation of gene expression, epigenetic	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=48.333; coverage=60.403; evalue=2.64e-51; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0045892	negative regulation of DNA-templated transcription	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=48.333; coverage=60.403; evalue=2.64e-51; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0045893	positive regulation of DNA-templated transcription	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=53.179; coverage=58.054; evalue=4.7e-58; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0048573	photoperiodism, flowering	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=48.333; coverage=60.403; evalue=2.64e-51; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0060966	regulation of gene silencing by regulatory ncRNA	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=48.333; coverage=60.403; evalue=2.64e-51; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:2000377	regulation of reactive oxygen species metabolic process	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=54.878; coverage=55.034; evalue=1.92e-56; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005634	nucleus	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=53.179; coverage=58.054; evalue=4.7e-58; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005730	nucleolus	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=48.333; coverage=60.403; evalue=2.64e-51; UniProt GO evidence=HDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005737	cytoplasm	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=53.179; coverage=58.054; evalue=4.7e-58; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005789	endoplasmic reticulum membrane	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=54.878; coverage=55.034; evalue=1.92e-56; UniProt GO evidence=IEA:UniProtKB-SubCell	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005794	Golgi apparatus	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=48.333; coverage=60.403; evalue=2.64e-51; UniProt GO evidence=ISM:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0016020	membrane	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=53.179; coverage=58.054; evalue=4.7e-58; UniProt GO evidence=IEA:UniProtKB-SubCell	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0000976	transcription cis-regulatory region binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=49.01; coverage=67.785; evalue=9.27e-57; UniProt GO evidence=IPI:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0003677	DNA binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=53.179; coverage=58.054; evalue=4.7e-58; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0003700	DNA-binding transcription factor activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=53.179; coverage=58.054; evalue=4.7e-58; UniProt GO evidence=ISS:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0043565	sequence-specific DNA binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=48.333; coverage=60.403; evalue=2.64e-51; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT3G10490	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=48.333; coverage=60.403; evalue=2.64e-51	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT3G10500	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=54.878; coverage=55.034; evalue=1.92e-56	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT5G04410	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=53.179; coverage=58.054; evalue=4.7e-58	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT5G09330	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=49.01; coverage=67.785; evalue=9.27e-57	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	dosa:Os03g0119966	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=52.174; coverage=54.027; evalue=7.52e-53	UniProtKB/Swiss-Prot DAT 2026 current_release