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Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene IDLXL04_027599
Query referenceOH1004
LocationChr06:19906827-19912336 (+)
DescriptionSimilar to DDB1: DNA damage-binding protein 1 (Solanum lycopersicum OX%3D4081)
Annotation source assemblyGCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_027599 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 12 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At4g05420 Component of light signal transduction machinery.
Regulation and role of Arabidopsis CUL4-DDB1A-DDB2 in maintaining genome integrity upon UV stress.2008 · DOI: 10.1371/journal.pgen.1000093
At4g21100 Component of light signal transduction machinery. No verified direct reference in this release

Rice

Reference gene IDPossible functionPapers / DOI
Os05g0592400 Required for DNA repair. No verified direct reference in this release

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

TypeIDNameNamespaceEvidenceSource
GOGO:0006281DNA repairBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=88.705; coverage=100.0; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009585red, far-red light phototransductionBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=91.651; coverage=100.092; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009793embryo development ending in seed dormancyBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=85.308; coverage=100.0; evalue=0.0; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0016567protein ubiquitinationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=91.651; coverage=100.092; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-UniPathwayUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0045892negative regulation of DNA-templated transcriptionBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=88.705; coverage=100.0; evalue=0.0; UniProt GO evidence=IPI:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005634nucleusCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=91.651; coverage=100.092; evalue=0.0; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005737cytoplasmCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=88.705; coverage=100.0; evalue=0.0; UniProt GO evidence=ISS:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005829cytosolCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=88.705; coverage=100.0; evalue=0.0; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0080008Cul4-RING E3 ubiquitin ligase complexCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=88.705; coverage=100.0; evalue=0.0; UniProt GO evidence=IPI:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0003676nucleic acid bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=91.651; coverage=100.092; evalue=0.0; UniProt GO evidence=IEA:InterProUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0003677DNA bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=88.705; coverage=100.0; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0003684damaged DNA bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=82.661; coverage=100.092; evalue=0.0; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT4G05420KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=88.705; coverage=100.0; evalue=0.0UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT4G21100KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=85.308; coverage=100.0; evalue=0.0UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGdosa:Os05g0592400KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=82.661; coverage=100.092; evalue=0.0UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGosa:4339794KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=82.661; coverage=100.092; evalue=0.0UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGsly:778355KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=91.651; coverage=100.092; evalue=0.0UniProtKB/Swiss-Prot DAT 2026 current_release