Gene Annotation
Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.
Search Results
| Gene ID | LXL04_025491 |
|---|---|
| Query reference | OH1004 |
| Location | Chr05:112496853-112503533 (+) |
| Description | Similar to At1g73710: Pentatricopeptide repeat-containing protein At1g73710 (Arabidopsis thaliana OX%3D3702) |
| Annotation source assembly | GCA_047496595.1_OSU_TarKok_2.0 |
Functional annotation source: OH1004 · LXL04_025491 · GCA_047496595.1_OSU_TarKok_2.0.
This query returns 12 GO annotations and 3 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.
Arabidopsis / Rice Reference Genes and Papers
Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.
Download references for this gene
Arabidopsis
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
At1g73710 |
Pentatricopeptide repeat-containing protein At1g73710. | No verified direct reference in this release |
At3g23020 |
Pentatricopeptide repeat-containing protein At3g23020. | No verified direct reference in this release |
At1g61250 |
Probably involved in membrane trafficking. | No verified direct reference in this release |
Rice
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
UniProt: A2YMP7 |
Probably involved in membrane trafficking. | No verified direct reference in this release |
Os07g0564600 |
Probably involved in membrane trafficking. | No verified direct reference in this release |
GO / KEGG
These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.
| Type | ID | Name | Namespace | Evidence | Source |
|---|---|---|---|---|---|
| GO | GO:0006355 | regulation of DNA-templated transcription | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=37.143; coverage=60.203; evalue=3.5e-165; UniProt GO evidence=IGI:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0010343 | singlet oxygen-mediated programmed cell death | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=37.143; coverage=60.203; evalue=3.5e-165; UniProt GO evidence=IGI:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0015031 | protein transport | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=60.385; coverage=20.328; evalue=3.58e-106; UniProt GO evidence=IEA:InterPro | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:1904821 | chloroplast disassembly | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=37.143; coverage=60.203; evalue=3.5e-165; UniProt GO evidence=IGI:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005739 | mitochondrion | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=56.811; coverage=74.042; evalue=0.0; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005769 | early endosome | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=60.385; coverage=20.328; evalue=3.58e-106; UniProt GO evidence=IEA:EnsemblPlants | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005886 | plasma membrane | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=60.385; coverage=20.328; evalue=3.58e-106; UniProt GO evidence=IEA:UniProtKB-SubCell | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009507 | chloroplast | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=37.143; coverage=60.203; evalue=3.5e-165; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0030658 | transport vesicle membrane | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=60.385; coverage=20.328; evalue=3.58e-106; UniProt GO evidence=IEA:UniProtKB-SubCell | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0032588 | trans-Golgi network membrane | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=60.385; coverage=20.328; evalue=3.58e-106; UniProt GO evidence=IEA:TreeGrafter | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0055038 | recycling endosome membrane | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=60.385; coverage=20.328; evalue=3.58e-106; UniProt GO evidence=IEA:TreeGrafter | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003729 | mRNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=37.143; coverage=60.203; evalue=3.5e-165; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| KEGG | ath:AT1G73710 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=56.811; coverage=74.042; evalue=0.0 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ath:AT3G23020 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=37.143; coverage=60.203; evalue=3.5e-165 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | dosa:Os07g0564600 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=60.385; coverage=20.328; evalue=4.39e-106 | UniProtKB/Swiss-Prot DAT 2026 current_release |