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Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene IDLXL04_023991
Query referenceOH1004
LocationChr05:77017279-77021138 (-)
DescriptionSimilar to CYP38: Peptidyl-prolyl cis-trans isomerase CYP38%2C chloroplastic (Arabidopsis thaliana OX%3D3702)
Annotation source assemblyGCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_023991 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 13 GO annotations and 4 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g01480 Required for the assembly and stabilization of PSII, but has no PPIases activity.
A chloroplast cyclophilin functions in the assembly and maintenance of photosystem II in Arabidopsis thaliana.2007 · DOI: 10.1073/pnas.0707851104
Crystal structure of Arabidopsis cyclophilin38 reveals a previously uncharacterized immunophilin fold and a possible autoinhibitory mechanism.2012 · DOI: 10.1105/tpc.111.093781
At3g15520 PPIases accelerate the folding of proteins. No verified direct reference in this release

Rice

No hit for this species in the current source table.

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

TypeIDNameNamespaceEvidenceSource
GOGO:0006457protein foldingBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=42.857; coverage=35.739; evalue=1.44e-34; UniProt GO evidence=IEA:InterProUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0010102lateral root morphogenesisBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=74.941; coverage=74.472; evalue=0.0; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0010207photosystem II assemblyBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=74.941; coverage=74.472; evalue=0.0; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0042549photosystem II stabilizationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=74.941; coverage=74.472; evalue=0.0; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005829cytosolCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=74.941; coverage=74.472; evalue=0.0; UniProt GO evidence=HDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009507chloroplastCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=74.941; coverage=74.472; evalue=0.0; UniProt GO evidence=HDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009534chloroplast thylakoidCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=74.941; coverage=74.472; evalue=0.0; UniProt GO evidence=HDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009535chloroplast thylakoid membraneCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=74.941; coverage=74.472; evalue=0.0; UniProt GO evidence=HDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009543chloroplast thylakoid lumenCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=74.941; coverage=74.472; evalue=0.0; UniProt GO evidence=HDA:TIGRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009570chloroplast stromaCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=74.941; coverage=74.472; evalue=0.0; UniProt GO evidence=HDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009579thylakoidCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=74.941; coverage=74.472; evalue=0.0; UniProt GO evidence=HDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0031977thylakoid lumenCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=74.941; coverage=74.472; evalue=0.0; UniProt GO evidence=HDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0003755peptidyl-prolyl cis-trans isomerase activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=74.941; coverage=74.472; evalue=0.0; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT3G01480KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=74.941; coverage=74.472; evalue=0.0UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT3G15520KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=30.127; coverage=69.542; evalue=4.05e-35UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGsyn:sll0227KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=42.857; coverage=35.739; evalue=1.44e-34UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGsyn:sll0408KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=44.248; coverage=59.683; evalue=1.39e-93UniProtKB/Swiss-Prot DAT 2026 current_release