Gene Annotation
Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.
Search Results
| Gene ID | LXL04_021931 |
|---|---|
| Query reference | OH1004 |
| Location | Chr04:140603588-140610102 (+) |
| Description | Similar to AP3BA: AP3-complex subunit beta-A (Arabidopsis thaliana OX%3D3702) |
| Annotation source assembly | GCA_047496595.1_OSU_TarKok_2.0 |
Functional annotation source: OH1004 · LXL04_021931 · GCA_047496595.1_OSU_TarKok_2.0.
This query returns 20 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.
Arabidopsis / Rice Reference Genes and Papers
Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.
Download references for this gene
Arabidopsis
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
At3g55480 |
Part of the AP-3 complex, an adaptor-related complex which seems to be clathrin-associated. |
Rice
No hit for this species in the current source table.
GO / KEGG
These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.
| Type | ID | Name | Namespace | Evidence | Source |
|---|---|---|---|---|---|
| GO | GO:0006882 | intracellular zinc ion homeostasis | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=34.464; coverage=62.564; evalue=3.28e-116; UniProt GO evidence=IMP:MGI | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006886 | intracellular protein transport | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=51.449; coverage=84.975; evalue=0.0; UniProt GO evidence=IEA:InterPro | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006896 | Golgi to vacuole transport | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=51.449; coverage=84.975; evalue=0.0; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0016192 | vesicle-mediated transport | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=51.449; coverage=84.975; evalue=0.0; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0035654 | clathrin-coated vesicle cargo loading, AP-3-mediated | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=34.464; coverage=62.564; evalue=3.28e-116; UniProt GO evidence=NAS:ComplexPortal | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0048499 | synaptic vesicle membrane organization | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=34.464; coverage=62.564; evalue=3.28e-116; UniProt GO evidence=IMP:MGI | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0051453 | regulation of intracellular pH | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=51.449; coverage=84.975; evalue=0.0; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0065003 | protein-containing complex assembly | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=34.464; coverage=62.564; evalue=3.28e-116; UniProt GO evidence=IMP:MGI | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0080171 | lytic vacuole organization | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=51.449; coverage=84.975; evalue=0.0; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0099180 | zinc ion import into synaptic vesicle | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=34.464; coverage=62.564; evalue=3.28e-116; UniProt GO evidence=IMP:MGI | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005634 | nucleus | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=51.449; coverage=84.975; evalue=0.0; UniProt GO evidence=ISM:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005769 | early endosome | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=34.464; coverage=62.564; evalue=3.28e-116; UniProt GO evidence=NAS:ComplexPortal | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005794 | Golgi apparatus | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=51.449; coverage=84.975; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-SubCell | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005802 | trans-Golgi network | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=34.464; coverage=62.564; evalue=3.28e-116; UniProt GO evidence=TAS:MGI | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0030117 | membrane coat | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=51.449; coverage=84.975; evalue=0.0; UniProt GO evidence=IEA:InterPro | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0030123 | AP-3 adaptor complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=34.464; coverage=62.564; evalue=3.28e-116; UniProt GO evidence=IEA:InterPro | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0030131 | clathrin adaptor complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=35.838; coverage=58.744; evalue=1.12e-115; UniProt GO evidence=IEA:InterPro | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0030659 | cytoplasmic vesicle membrane | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=51.449; coverage=84.975; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-SubCell | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0030665 | clathrin-coated vesicle membrane | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=34.464; coverage=62.564; evalue=3.28e-116; UniProt GO evidence=IEA:UniProtKB-SubCell | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0097708 | intracellular vesicle | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=35.182; coverage=58.149; evalue=4.52e-115; UniProt GO evidence=TAS:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| KEGG | ath:AT3G55480 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=51.449; coverage=84.975; evalue=0.0 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | bta:767602 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=35.838; coverage=58.744; evalue=1.12e-115 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | cfa:403459 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=34.593; coverage=58.404; evalue=2.04e-112 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | hsa:8120 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=35.182; coverage=58.149; evalue=4.52e-115 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | mmu:11775 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=34.464; coverage=62.564; evalue=3.28e-116 | UniProtKB/Swiss-Prot DAT 2026 current_release |