Gene Annotation
Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.
Search Results
| Gene ID | LXL04_020711 |
|---|---|
| Query reference | OH1004 |
| Location | Chr04:106711211-106713377 (+) |
| Description | Similar to AIRP2: E3 ubiquitin-protein ligase AIRP2 (Arabidopsis thaliana OX%3D3702) |
| Annotation source assembly | GCA_047496595.1_OSU_TarKok_2.0 |
Functional annotation source: OH1004 · LXL04_020711 · GCA_047496595.1_OSU_TarKok_2.0.
This query returns 36 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.
Arabidopsis / Rice Reference Genes and Papers
Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.
Download references for this gene
Arabidopsis
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
At5g01520 |
Possesses E3 ubiquitin-protein ligase activity in vitro when associated with the E2 enzyme UBC8 in vitro. |
Rice
No hit for this species in the current source table.
GO / KEGG
These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.
| Type | ID | Name | Namespace | Evidence | Source |
|---|---|---|---|---|---|
| GO | GO:0006302 | double-strand break repair | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=38.806; coverage=26.275; evalue=2.29e-06; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006303 | double-strand break repair via nonhomologous end joining | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=38.806; coverage=26.275; evalue=2.29e-06; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006511 | ubiquitin-dependent protein catabolic process | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=45.957; coverage=92.157; evalue=1.1e-70; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006974 | DNA damage response | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=38.806; coverage=26.275; evalue=2.29e-06; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009651 | response to salt stress | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=45.957; coverage=92.157; evalue=1.1e-70; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009737 | response to abscisic acid | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=45.957; coverage=92.157; evalue=1.1e-70; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009789 | positive regulation of abscisic acid-activated signaling pathway | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=45.957; coverage=92.157; evalue=1.1e-70; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0010212 | response to ionizing radiation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=38.806; coverage=26.275; evalue=2.29e-06; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0016567 | protein ubiquitination | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=29.457; coverage=50.588; evalue=9.46e-06; UniProt GO evidence=IEA:UniProtKB-UniPathway | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0034244 | negative regulation of transcription elongation by RNA polymerase II | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=38.806; coverage=26.275; evalue=2.29e-06; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0035092 | sperm DNA condensation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=38.806; coverage=26.275; evalue=2.29e-06; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0040029 | epigenetic regulation of gene expression | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=38.806; coverage=26.275; evalue=2.29e-06; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0044818 | mitotic G2/M transition checkpoint | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=29.457; coverage=50.588; evalue=9.46e-06; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0045739 | positive regulation of DNA repair | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=38.806; coverage=26.275; evalue=2.29e-06; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0051301 | cell division | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=38.806; coverage=26.275; evalue=2.29e-06; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0051865 | protein autoubiquitination | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=25.0; coverage=42.353; evalue=7.72e-06; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0070534 | protein K63-linked ubiquitination | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=38.806; coverage=26.275; evalue=2.29e-06; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0070936 | protein K48-linked ubiquitination | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=38.806; coverage=26.275; evalue=2.29e-06; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0085020 | protein K6-linked ubiquitination | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=38.806; coverage=26.275; evalue=2.29e-06; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0140861 | DNA repair-dependent chromatin remodeling | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=38.806; coverage=26.275; evalue=2.29e-06; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:1905168 | positive regulation of double-strand break repair via homologous recombination | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=38.806; coverage=26.275; evalue=2.29e-06; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000151 | ubiquitin ligase complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=38.806; coverage=26.275; evalue=2.29e-06; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000781 | chromosome, telomeric region | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=38.806; coverage=26.275; evalue=2.29e-06; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005634 | nucleus | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=45.957; coverage=92.157; evalue=1.1e-70; UniProt GO evidence=ISM:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005737 | cytoplasm | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=38.806; coverage=26.275; evalue=2.29e-06; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005829 | cytosol | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=45.957; coverage=92.157; evalue=1.1e-70; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0030496 | midbody | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=38.806; coverage=26.275; evalue=2.29e-06; UniProt GO evidence=IEA:UniProtKB-SubCell | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0035861 | site of double-strand break | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=38.806; coverage=26.275; evalue=2.29e-06; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000166 | nucleotide binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=29.457; coverage=50.588; evalue=9.46e-06; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003682 | chromatin binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=38.806; coverage=26.275; evalue=2.29e-06; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0004842 | ubiquitin-protein transferase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=45.957; coverage=92.157; evalue=1.1e-70; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0008270 | zinc ion binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=45.957; coverage=92.157; evalue=1.1e-70; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0042393 | histone binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=38.806; coverage=26.275; evalue=2.29e-06; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0042803 | protein homodimerization activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=38.806; coverage=26.275; evalue=2.29e-06; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0043130 | ubiquitin binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=38.806; coverage=26.275; evalue=2.29e-06; UniProt GO evidence=IEA:UniProtKB-UniRule | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0061630 | ubiquitin protein ligase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=45.957; coverage=92.157; evalue=1.1e-70; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| KEGG | ath:AT5G01520 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=45.957; coverage=92.157; evalue=1.1e-70 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | bta:515933 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=38.806; coverage=26.275; evalue=2.29e-06 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | dre:564271 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=29.457; coverage=50.588; evalue=9.46e-06 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | gga:423039 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=25.0; coverage=42.353; evalue=7.72e-06 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | xla:380076 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=26.429; coverage=54.902; evalue=4.44e-06 | UniProtKB/Swiss-Prot DAT 2026 current_release |