Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene ID	`LXL04_017178`
Query reference	OH1004
Location	Chr03:142706155-142709364 (+)
Description	Similar to EBP2: Probable rRNA-processing protein EBP2 homolog (Arabidopsis thaliana OX%3D3702)
Annotation source assembly	GCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_017178 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 24 GO annotations and 3 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g22660`	Required for the processing of the 27S pre-rRNA (By similarity).	The nucleolar GTPase nucleostemin-like 1 plays a role in plant growth and senescence by modulating ribosome biogenesis.2015 · DOI: 10.1093/jxb/erv337
`At5g40280`	Catalyzes the transfer of a farnesyl moiety from farnesyl diphosphate to a cysteine at the fourth position from the C-terminus of several proteins having the C-terminal sequence Cys-aliphatic- aliphatic-X (CaaX).	The CaaX specificities of Arabidopsis protein prenyltransferases explain era1 and ggb phenotypes.2010 · DOI: 10.1186/1471-2229-10-118 ASG2 is a farnesylated DWD protein that acts as ABA negative regulator in Arabidopsis.2016 · DOI: 10.1111/pce.12605

Rice

No hit for this species in the current source table.

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

Type	ID	Name	Namespace	Evidence	Source
GO	GO:0006364	rRNA processing	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=61.957; coverage=55.533; evalue=5.03e-105; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009414	response to water deprivation	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=49.419; coverage=34.608; evalue=1.58e-39; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009620	response to fungus	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=49.419; coverage=34.608; evalue=1.58e-39; UniProt GO evidence=IGI:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009737	response to abscisic acid	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=49.419; coverage=34.608; evalue=1.58e-39; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009788	negative regulation of abscisic acid-activated signaling pathway	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=49.419; coverage=34.608; evalue=1.58e-39; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009934	regulation of meristem structural organization	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=49.419; coverage=34.608; evalue=1.58e-39; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0018342	protein prenylation	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=49.419; coverage=34.608; evalue=1.58e-39; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0018343	protein farnesylation	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=50.262; coverage=38.431; evalue=3.67e-48; UniProt GO evidence=ISS:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0042273	ribosomal large subunit biogenesis	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=61.957; coverage=55.533; evalue=5.03e-105; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0047484	regulation of response to osmotic stress	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=49.419; coverage=34.608; evalue=1.58e-39; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0160062	cutin-based cuticle development	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=49.419; coverage=34.608; evalue=1.58e-39; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:1901000	regulation of response to salt stress	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=49.419; coverage=34.608; evalue=1.58e-39; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:1990069	stomatal opening	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=49.419; coverage=34.608; evalue=1.58e-39; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005634	nucleus	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=61.957; coverage=55.533; evalue=5.03e-105; UniProt GO evidence=ISM:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005730	nucleolus	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=61.957; coverage=55.533; evalue=5.03e-105; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005965	protein farnesyltransferase complex	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=50.262; coverage=38.431; evalue=3.67e-48; UniProt GO evidence=ISS:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0030684	preribosome	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=31.399; coverage=58.954; evalue=2.33e-24; UniProt GO evidence=IDA:PomBase	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0030687	preribosome, large subunit precursor	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=61.957; coverage=55.533; evalue=5.03e-105; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0034399	nuclear periphery	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=61.957; coverage=55.533; evalue=5.03e-105; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0003723	RNA binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=61.957; coverage=55.533; evalue=5.03e-105; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0003924	GTPase activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=61.957; coverage=55.533; evalue=5.03e-105; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0004311	geranylgeranyl diphosphate synthase activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=49.419; coverage=34.608; evalue=1.58e-39; UniProt GO evidence=ISS:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0004660	protein farnesyltransferase activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=50.262; coverage=38.431; evalue=3.67e-48; UniProt GO evidence=ISS:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0008270	zinc ion binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=50.262; coverage=38.431; evalue=3.67e-48; UniProt GO evidence=ISS:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT3G22660	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=61.957; coverage=55.533; evalue=5.03e-105	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT5G40280	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=49.419; coverage=34.608; evalue=1.58e-39	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	spo:2542121	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=31.399; coverage=58.954; evalue=2.33e-24	UniProtKB/Swiss-Prot DAT 2026 current_release