Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene ID	`LXL04_013221`
Query reference	OH1004
Location	Chr03:26216882-26220256 (-)
Description	Similar to UKL1: Uridine kinase-like protein 1%2C chloroplastic (Arabidopsis thaliana OX%3D3702)
Annotation source assembly	GCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_013221 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 16 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g40870`	Involved in the pyrimidine salvage pathway (Probable).	Functional characterization of a gene encoding a dual domain for uridine kinase and uracil phosphoribosyltransferase in Arabidopsis thaliana.2007 · DOI: 10.1007/s11103-006-9101-3 Plastid uridine salvage activity is required for photoassimilate allocation and partitioning in Arabidopsis.2011 · DOI: 10.1105/tpc.111.085829 Pyrimidine Salvage: Physiological Functions and Interaction with Chloroplast Biogenesis.2019 · DOI: 10.1104/pp.19.00329
`At3g27190`	Involved in the pyrimidine salvage pathway.	Plastid uridine salvage activity is required for photoassimilate allocation and partitioning in Arabidopsis.2011 · DOI: 10.1105/tpc.111.085829 Pyrimidine Salvage: Physiological Functions and Interaction with Chloroplast Biogenesis.2019 · DOI: 10.1104/pp.19.00329
`At4g26510`	Involved in the pyrimidine salvage pathway.	No verified direct reference in this release
`At1g55810`	Involved in the pyrimidine salvage pathway.	No verified direct reference in this release
`At3g27440`	Involved in the pyrimidine salvage pathway.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

Type	ID	Name	Namespace	Evidence	Source
GO	GO:0006207	'de novo' pyrimidine nucleobase biosynthetic process	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=71.375; coverage=100.561; evalue=0.0; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0044206	UMP salvage	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=71.561; coverage=100.561; evalue=0.0; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0044211	CTP salvage	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=71.561; coverage=100.561; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-UniPathway	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0071456	cellular response to hypoxia	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=65.631; coverage=96.262; evalue=0.0; UniProt GO evidence=HEP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:1901141	regulation of lignin biosynthetic process	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=71.375; coverage=100.561; evalue=0.0; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:2000904	regulation of starch metabolic process	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=71.561; coverage=100.561; evalue=0.0; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:2001006	regulation of cellulose biosynthetic process	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=71.375; coverage=100.561; evalue=0.0; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005634	nucleus	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=63.958; coverage=89.72; evalue=0.0; UniProt GO evidence=ISM:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005737	cytoplasm	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=71.561; coverage=100.561; evalue=0.0; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009507	chloroplast	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=71.561; coverage=100.561; evalue=0.0; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0004845	uracil phosphoribosyltransferase activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=66.221; coverage=97.944; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-EC	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0004849	uridine kinase activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=71.561; coverage=100.561; evalue=0.0; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005524	ATP binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=71.561; coverage=100.561; evalue=0.0; UniProt GO evidence=IEA:InterPro	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005525	GTP binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=71.561; coverage=100.561; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0016757	glycosyltransferase activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=71.561; coverage=100.561; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0043771	cytidine kinase activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=71.561; coverage=100.561; evalue=0.0; UniProt GO evidence=IEA:RHEA	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT1G55810	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=65.631; coverage=96.262; evalue=0.0	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT3G27190	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=71.375; coverage=100.561; evalue=0.0	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT3G27440	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=63.958; coverage=89.72; evalue=0.0	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT4G26510	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=66.221; coverage=97.944; evalue=0.0	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT5G40870	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=71.561; coverage=100.561; evalue=0.0	UniProtKB/Swiss-Prot DAT 2026 current_release