Gene Annotation
Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.
Search Results
| Gene ID | LXL04_012674 |
|---|---|
| Query reference | OH1004 |
| Location | Chr03:16682198-16684574 (+) |
| Description | Similar to CBP20: Nuclear cap-binding protein subunit 2 (Arabidopsis thaliana OX%3D3702) |
| Annotation source assembly | GCA_047496595.1_OSU_TarKok_2.0 |
Functional annotation source: OH1004 · LXL04_012674 · GCA_047496595.1_OSU_TarKok_2.0.
This query returns 38 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.
Arabidopsis / Rice Reference Genes and Papers
Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.
Download references for this gene
Arabidopsis
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
At5g44200 |
Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing and RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs). |
Dual roles of the nuclear cap-binding complex and SERRATE in pre-mRNA splicing and microRNA processing in Arabidopsis thaliana.2008 · DOI: 10.1073/pnas.0802493105
|
Rice
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
Os02g0612300 |
Component of the cap-binding complex (CBC), which binds co-transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing and RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs). | No verified direct reference in this release |
GO / KEGG
These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.
| Type | ID | Name | Namespace | Evidence | Source |
|---|---|---|---|---|---|
| GO | GO:0000184 | nuclear-transcribed mRNA catabolic process, nonsense-mediated decay | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=60.584; coverage=44.194; evalue=2.69e-53; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000380 | alternative mRNA splicing, via spliceosome | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=69.008; coverage=78.065; evalue=5.85e-102; UniProt GO evidence=IMP:ComplexPortal | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000394 | RNA splicing, via endonucleolytic cleavage and ligation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=69.008; coverage=78.065; evalue=5.85e-102; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000398 | mRNA splicing, via spliceosome | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=69.008; coverage=78.065; evalue=5.85e-102; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000956 | nuclear-transcribed mRNA catabolic process | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=69.008; coverage=78.065; evalue=5.85e-102; UniProt GO evidence=NAS:ComplexPortal | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0002191 | cap-dependent translational initiation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=60.584; coverage=44.194; evalue=2.69e-53; UniProt GO evidence=NAS:ComplexPortal | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006406 | mRNA export from nucleus | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=69.008; coverage=78.065; evalue=5.85e-102; UniProt GO evidence=NAS:ComplexPortal | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006408 | snRNA export from nucleus | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=60.584; coverage=44.194; evalue=2.69e-53; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006446 | regulation of translational initiation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=60.584; coverage=44.194; evalue=2.69e-53; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0008334 | histone mRNA metabolic process | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=60.584; coverage=44.194; evalue=2.69e-53; UniProt GO evidence=IMP:ComplexPortal | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0008380 | RNA splicing | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=60.584; coverage=44.194; evalue=2.69e-53; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0016070 | RNA metabolic process | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=69.008; coverage=78.065; evalue=5.85e-102; UniProt GO evidence=TAS:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0016071 | mRNA metabolic process | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=60.584; coverage=44.194; evalue=2.69e-53; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0031047 | regulatory ncRNA-mediated gene silencing | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=63.415; coverage=79.355; evalue=2.4e-94; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0031053 | primary miRNA processing | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=69.008; coverage=78.065; evalue=5.85e-102; UniProt GO evidence=IMP:ComplexPortal | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0031124 | mRNA 3'-end processing | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=60.584; coverage=44.194; evalue=2.69e-53; UniProt GO evidence=NAS:ComplexPortal | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0031442 | positive regulation of mRNA 3'-end processing | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=60.584; coverage=44.194; evalue=2.69e-53; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0032968 | positive regulation of transcription elongation by RNA polymerase II | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=60.584; coverage=44.194; evalue=2.69e-53; UniProt GO evidence=NAS:ComplexPortal | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0035194 | regulatory ncRNA-mediated post-transcriptional gene silencing | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=60.584; coverage=44.194; evalue=2.69e-53; UniProt GO evidence=NAS:ComplexPortal | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0035195 | miRNA-mediated post-transcriptional gene silencing | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=69.008; coverage=78.065; evalue=5.85e-102; UniProt GO evidence=NAS:ComplexPortal | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0042789 | mRNA transcription by RNA polymerase II | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=69.008; coverage=78.065; evalue=5.85e-102; UniProt GO evidence=NAS:ComplexPortal | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0045292 | mRNA cis splicing, via spliceosome | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=69.008; coverage=78.065; evalue=5.85e-102; UniProt GO evidence=IEA:InterPro | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0046833 | positive regulation of RNA export from nucleus | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=60.584; coverage=44.194; evalue=2.69e-53; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0051028 | mRNA transport | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=60.584; coverage=44.194; evalue=2.69e-53; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0051607 | defense response to virus | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=69.008; coverage=78.065; evalue=5.85e-102; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:1901527 | abscisic acid-activated signaling pathway involved in stomatal movement | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=69.008; coverage=78.065; evalue=5.85e-102; UniProt GO evidence=IDA:ComplexPortal | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005634 | nucleus | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=69.008; coverage=78.065; evalue=5.85e-102; UniProt GO evidence=IDA:ComplexPortal | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005654 | nucleoplasm | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=60.584; coverage=44.194; evalue=2.69e-53; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005737 | cytoplasm | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=69.008; coverage=78.065; evalue=5.85e-102; UniProt GO evidence=IEA:UniProtKB-SubCell | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005829 | cytosol | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=60.584; coverage=44.194; evalue=2.69e-53; UniProt GO evidence=IDA:HPA | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005846 | nuclear cap binding complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=69.008; coverage=78.065; evalue=5.85e-102; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0034518 | RNA cap binding complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=60.584; coverage=44.194; evalue=2.69e-53; UniProt GO evidence=IMP:CAFA | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000339 | RNA cap binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=69.008; coverage=78.065; evalue=5.85e-102; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000340 | RNA 7-methylguanosine cap binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=60.584; coverage=44.194; evalue=2.69e-53; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003677 | DNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=60.584; coverage=44.194; evalue=2.69e-53; UniProt GO evidence=EXP:DisProt | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003723 | RNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=60.584; coverage=44.194; evalue=2.69e-53; UniProt GO evidence=HDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003729 | mRNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=60.584; coverage=44.194; evalue=2.69e-53; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0017069 | snRNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=60.584; coverage=44.194; evalue=2.69e-53; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| KEGG | ath:AT5G44200 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=69.008; coverage=78.065; evalue=5.85e-102 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | bta:510872 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=60.584; coverage=44.194; evalue=2.69e-53 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | dosa:Os02g0612300 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=63.415; coverage=79.355; evalue=2.4e-94 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | hsa:22916 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=60.584; coverage=44.194; evalue=2.69e-53 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | isc:8026041 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=55.405; coverage=47.742; evalue=3.53e-53 | UniProtKB/Swiss-Prot DAT 2026 current_release |