Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene ID	`LXL04_012505`
Query reference	OH1004
Location	Chr03:13423766-13424812 (+)
Description	Similar to VPS9A: Vacuolar protein sorting-associated protein 9A (Arabidopsis thaliana OX%3D3702)
Annotation source assembly	GCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_012505 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 24 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g19770`	Functions as a guanine nucleotide exchange factor (GEF) for Rab small GTPases.	VPS9a, the common activator for two distinct types of Rab5 GTPases, is essential for the development of Arabidopsis thaliana.2007 · DOI: 10.1105/tpc.107.053876 GDP-bound and nucleotide-free intermediates of the guanine nucleotide exchange in the Rab5·Vps9 system.2010 · DOI: 10.1074/jbc.m110.152132

Rice

Reference gene ID	Possible function	Papers / DOI
`Os03g0262900`	Functions as a guanine nucleotide exchange factor (GEF) for Rab small GTPases.	OsVPS9A functions cooperatively with OsRAB5A to regulate post-Golgi dense vesicle-mediated storage protein trafficking to the protein storage vacuole in rice endosperm cells.2013 · DOI: 10.1093/mp/sst081

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

Type	ID	Name	Namespace	Evidence	Source
GO	GO:0000919	cell plate assembly	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=61.804; coverage=108.333; evalue=6.03e-164; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0006886	intracellular protein transport	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=58.824; coverage=107.471; evalue=1.67e-156; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0006897	endocytosis	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=35.78; coverage=62.644; evalue=3.57e-32; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009793	embryo development ending in seed dormancy	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=61.804; coverage=108.333; evalue=6.03e-164; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0016192	vesicle-mediated transport	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=58.824; coverage=107.471; evalue=1.67e-156; UniProt GO evidence=IEA:InterPro	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0042546	cell wall biogenesis	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=61.804; coverage=108.333; evalue=6.03e-164; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0045324	late endosome to vacuole transport	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=61.804; coverage=108.333; evalue=6.03e-164; UniProt GO evidence=IGI:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0048528	post-embryonic root development	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=61.804; coverage=108.333; evalue=6.03e-164; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0051223	regulation of protein transport	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=35.78; coverage=62.644; evalue=3.57e-32; UniProt GO evidence=ISS:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0000325	plant-type vacuole	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=58.824; coverage=107.471; evalue=1.67e-156; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005737	cytoplasm	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=61.804; coverage=108.333; evalue=6.03e-164; UniProt GO evidence=ISM:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005768	endosome	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=35.78; coverage=62.644; evalue=3.57e-32; UniProt GO evidence=IEA:UniProtKB-SubCell	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005802	trans-Golgi network	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=58.824; coverage=107.471; evalue=1.67e-156; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005829	cytosol	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=61.804; coverage=108.333; evalue=6.03e-164; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005886	plasma membrane	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=35.455; coverage=63.218; evalue=6.03e-32; UniProt GO evidence=IDA:HPA	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0016020	membrane	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=35.78; coverage=62.644; evalue=3.57e-32; UniProt GO evidence=IEA:UniProtKB-SubCell	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0030139	endocytic vesicle	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=61.804; coverage=108.333; evalue=6.03e-164; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005085	guanyl-nucleotide exchange factor activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=61.804; coverage=108.333; evalue=6.03e-164; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005096	GTPase activator activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=61.804; coverage=108.333; evalue=6.03e-164; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005525	GTP binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=61.804; coverage=108.333; evalue=6.03e-164; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0031267	small GTPase binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=61.804; coverage=108.333; evalue=6.03e-164; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0032794	GTPase activating protein binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=35.78; coverage=62.644; evalue=3.57e-32; UniProt GO evidence=ISS:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0043130	ubiquitin binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=33.333; coverage=73.276; evalue=1.43e-40; UniProt GO evidence=IEA:InterPro	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0045296	cadherin binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=35.455; coverage=63.218; evalue=6.03e-32; UniProt GO evidence=HDA:BHF-UCL	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT3G19770	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=61.804; coverage=108.333; evalue=6.03e-164	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	dosa:Os03g0262900	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=58.824; coverage=107.471; evalue=1.67e-156	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	hsa:26130	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=35.455; coverage=63.218; evalue=6.03e-32	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	spo:2540886	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=33.333; coverage=73.276; evalue=1.43e-40	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	xla:100037133	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=35.78; coverage=62.644; evalue=3.57e-32	UniProtKB/Swiss-Prot DAT 2026 current_release