Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene ID	`LXL04_010289`
Query reference	OH1004
Location	Chr02:143715252-143716853 (-)
Description	Similar to WOX7: WUSCHEL-related homeobox 7 (Oryza sativa subsp. japonica OX%3D39947)
Annotation source assembly	GCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_010289 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 12 GO annotations and 2 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g45980`	Probable transcription factor, which may be involved in embryonic patterning.	Expression dynamics of WOX genes mark cell fate decisions during early embryonic patterning in Arabidopsis thaliana.2004 · DOI: 10.1242/dev.00963 Combinations of WOX activities regulate tissue proliferation during Arabidopsis embryonic development.2007 · DOI: 10.1016/j.ydbio.2007.07.019 WOX2 and STIMPY-LIKE/WOX8 promote cotyledon boundary formation in Arabidopsis.2012 · DOI: 10.1111/j.1365-313x.2012.05113.x

Rice

Reference gene ID	Possible function	Papers / DOI
`Os01g0667400`	Transcription factor which may be involved in developmental processes.	No verified direct reference in this release
`Os05g0564500`	Transcription factor which may be involved in developmental processes.	No verified direct reference in this release
`Os07g0533100`	Transcription factor which may be involved in developmental processes.	No verified direct reference in this release
`Os07g0684900`	Transcription factor involved in crown root development.	The WUSCHEL-related homeobox gene WOX11 is required to activate shoot-borne crown root development in rice.2009 · DOI: 10.1105/tpc.108.061655 The Interaction between Rice ERF3 and WOX11 Promotes Crown Root Development by Regulating Gene Expression Involved in Cytokinin Signaling.2015 · DOI: 10.1105/tpc.15.00227 Rice Homeodomain Protein WOX11 Recruits a Histone Acetyltransferase Complex to Establish Programs of Cell Proliferation of Crown Root Meristem.2017 · DOI: 10.1105/tpc.16.00908 Transcriptional regulatory network of WOX11 is involved in the control of crown root development, cytokinin signals, and redox in rice.2017 · DOI: 10.1093/jxb/erx153 The YUCCA-Auxin-WOX11 Module Controls Crown Root Development in Rice.2018 · DOI: 10.3389/fpls.2018.00523

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

Type	ID	Name	Namespace	Evidence	Source
GO	GO:0006351	DNA-templated transcription	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=80.0; coverage=20.151; evalue=7.05e-39; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0008284	positive regulation of cell population proliferation	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=52.899; coverage=34.761; evalue=4.57e-38; UniProt GO evidence=IGI:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009793	embryo development ending in seed dormancy	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=52.899; coverage=34.761; evalue=4.57e-38; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0030010	establishment of cell polarity	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=52.899; coverage=34.761; evalue=4.57e-38; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0048731	system development	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=80.0; coverage=20.151; evalue=7.05e-39; UniProt GO evidence=IEA:UniProtKB-ARBA	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0048825	cotyledon development	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=52.899; coverage=34.761; evalue=4.57e-38; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0050793	regulation of developmental process	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=80.0; coverage=20.151; evalue=7.05e-39; UniProt GO evidence=IEA:InterPro	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0090451	cotyledon boundary formation	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=52.899; coverage=34.761; evalue=4.57e-38; UniProt GO evidence=IGI:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:1905393	plant organ formation	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=80.0; coverage=20.151; evalue=7.05e-39; UniProt GO evidence=IEA:UniProtKB-ARBA	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005634	nucleus	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=80.0; coverage=20.151; evalue=7.05e-39; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0000976	transcription cis-regulatory region binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=80.0; coverage=20.151; evalue=7.05e-39; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0003700	DNA-binding transcription factor activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=80.0; coverage=20.151; evalue=7.05e-39; UniProt GO evidence=IEA:InterPro	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT5G45980	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=52.899; coverage=34.761; evalue=4.57e-38	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	dosa:Os01g0667400	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=80.0; coverage=20.151; evalue=7.05e-39	UniProtKB/Swiss-Prot DAT 2026 current_release