Gene Annotation
Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.
Search Results
| Gene ID | LXL04_009765 |
|---|---|
| Query reference | OH1004 |
| Location | Chr02:132862069-132866107 (+) |
| Description | Similar to HDA18: Histone deacetylase 18 (Arabidopsis thaliana OX%3D3702) |
| Annotation source assembly | GCA_047496595.1_OSU_TarKok_2.0 |
Functional annotation source: OH1004 · LXL04_009765 · GCA_047496595.1_OSU_TarKok_2.0.
This query returns 63 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.
Arabidopsis / Rice Reference Genes and Papers
Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.
Download references for this gene
Arabidopsis
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
At5g61070 |
Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). | |
At5g61060 |
Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4) (Probable). |
Rice
No hit for this species in the current source table.
GO / KEGG
These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.
| Type | ID | Name | Namespace | Evidence | Source |
|---|---|---|---|---|---|
| GO | GO:0000122 | negative regulation of transcription by RNA polymerase II | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=56.79; coverage=15.084; evalue=5.22e-20; UniProt GO evidence=IEA:InterPro | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006325 | chromatin organization | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=56.79; coverage=15.084; evalue=5.22e-20; UniProt GO evidence=TAS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006338 | chromatin remodeling | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=65.854; coverage=15.27; evalue=1.78e-25; UniProt GO evidence=ISS:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006351 | DNA-templated transcription | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=65.854; coverage=15.27; evalue=1.78e-25; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0008284 | positive regulation of cell population proliferation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=56.79; coverage=15.084; evalue=5.79e-20; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0008285 | negative regulation of cell population proliferation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=56.79; coverage=15.084; evalue=5.79e-20; UniProt GO evidence=IDA:MGI | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009410 | response to xenobiotic stimulus | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=56.79; coverage=15.084; evalue=5.79e-20; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009908 | flower development | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=67.073; coverage=15.27; evalue=6.02e-25; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0010053 | root epidermal cell differentiation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=65.854; coverage=15.27; evalue=1.78e-25; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0010592 | positive regulation of lamellipodium assembly | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=56.79; coverage=15.084; evalue=5.79e-20; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0010882 | regulation of cardiac muscle contraction by calcium ion signaling | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=56.79; coverage=15.084; evalue=5.79e-20; UniProt GO evidence=IMP:MGI | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0010944 | negative regulation of transcription by competitive promoter binding | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=56.79; coverage=15.084; evalue=5.79e-20; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0014894 | response to denervation involved in regulation of muscle adaptation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=56.79; coverage=15.084; evalue=5.79e-20; UniProt GO evidence=IMP:BHF-UCL | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0014911 | positive regulation of smooth muscle cell migration | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=56.79; coverage=15.084; evalue=5.79e-20; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0033235 | positive regulation of protein sumoylation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=56.79; coverage=15.084; evalue=5.79e-20; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0040029 | epigenetic regulation of gene expression | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=65.854; coverage=15.27; evalue=1.78e-25; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0045814 | negative regulation of gene expression, epigenetic | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=67.073; coverage=15.27; evalue=6.02e-25; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0045820 | negative regulation of glycolytic process | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=56.79; coverage=15.084; evalue=5.79e-20; UniProt GO evidence=IMP:BHF-UCL | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0045892 | negative regulation of DNA-templated transcription | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=56.79; coverage=15.084; evalue=5.22e-20; UniProt GO evidence=TAS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0045893 | positive regulation of DNA-templated transcription | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=56.79; coverage=15.084; evalue=5.79e-20; UniProt GO evidence=IMP:BHF-UCL | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0045944 | positive regulation of transcription by RNA polymerase II | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=56.79; coverage=15.084; evalue=5.79e-20; UniProt GO evidence=IMP:BHF-UCL | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0048510 | regulation of timing of transition from vegetative to reproductive phase | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=67.073; coverage=15.27; evalue=6.02e-25; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0048661 | positive regulation of smooth muscle cell proliferation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=56.79; coverage=15.084; evalue=5.79e-20; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0050793 | regulation of developmental process | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=65.854; coverage=15.27; evalue=1.78e-25; UniProt GO evidence=IEA:UniProtKB-ARBA | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0060337 | type I interferon-mediated signaling pathway | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=56.79; coverage=15.084; evalue=5.79e-20; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0061084 | negative regulation of protein refolding | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=56.79; coverage=15.084; evalue=5.79e-20; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0070555 | response to interleukin-1 | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=56.79; coverage=15.084; evalue=5.79e-20; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0071260 | cellular response to mechanical stimulus | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=56.79; coverage=15.084; evalue=6.17e-20; UniProt GO evidence=IEP:RGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0071356 | cellular response to tumor necrosis factor | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=56.79; coverage=15.084; evalue=6.17e-20; UniProt GO evidence=IEP:RGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0071374 | cellular response to parathyroid hormone stimulus | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=56.79; coverage=15.084; evalue=6.17e-20; UniProt GO evidence=IEP:RGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0090558 | plant epidermis development | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=65.854; coverage=15.27; evalue=1.78e-25; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0097305 | response to alcohol | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=56.79; coverage=15.084; evalue=6.17e-20; UniProt GO evidence=IEP:RGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:1902894 | negative regulation of miRNA transcription | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=56.79; coverage=15.084; evalue=5.79e-20; UniProt GO evidence=IMP:BHF-UCL | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:1903428 | positive regulation of reactive oxygen species biosynthetic process | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=56.79; coverage=15.084; evalue=5.79e-20; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000118 | histone deacetylase complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=65.854; coverage=15.27; evalue=1.78e-25; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000785 | chromatin | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=56.79; coverage=15.084; evalue=5.79e-20; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005634 | nucleus | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=65.854; coverage=15.27; evalue=1.78e-25; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005654 | nucleoplasm | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=56.79; coverage=15.084; evalue=5.79e-20; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005737 | cytoplasm | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=65.854; coverage=15.27; evalue=1.78e-25; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005829 | cytosol | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=56.79; coverage=15.084; evalue=5.79e-20; UniProt GO evidence=IDA:MGI | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0016607 | nuclear speck | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=56.79; coverage=15.084; evalue=5.79e-20; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0017053 | transcription repressor complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=56.79; coverage=15.084; evalue=5.79e-20; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0032991 | protein-containing complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=56.79; coverage=15.084; evalue=5.79e-20; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0042641 | actomyosin | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=56.79; coverage=15.084; evalue=5.79e-20; UniProt GO evidence=IDA:MGI | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000978 | RNA polymerase II cis-regulatory region sequence-specific DNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=56.79; coverage=15.084; evalue=5.79e-20; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0001216 | DNA-binding transcription activator activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=56.79; coverage=15.084; evalue=5.79e-20; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003677 | DNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=56.79; coverage=15.084; evalue=5.79e-20; UniProt GO evidence=IDA:MGI | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003682 | chromatin binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=56.79; coverage=15.084; evalue=5.79e-20; UniProt GO evidence=IDA:MGI | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003714 | transcription corepressor activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=56.79; coverage=15.084; evalue=5.79e-20; UniProt GO evidence=IGI:MGI | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0004407 | histone deacetylase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=65.854; coverage=15.27; evalue=1.78e-25; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0008270 | zinc ion binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=65.854; coverage=15.27; evalue=1.78e-25; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0019789 | SUMO transferase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=56.79; coverage=15.084; evalue=5.79e-20; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0019901 | protein kinase binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=56.79; coverage=15.084; evalue=5.79e-20; UniProt GO evidence=IPI:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0030955 | potassium ion binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=56.79; coverage=15.084; evalue=5.79e-20; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0033558 | protein lysine deacetylase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=56.79; coverage=15.084; evalue=5.79e-20; UniProt GO evidence=IDA:MGI | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0042802 | identical protein binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=56.79; coverage=15.084; evalue=5.79e-20; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0042826 | histone deacetylase binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=56.79; coverage=15.084; evalue=5.79e-20; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0046872 | metal ion binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=56.79; coverage=15.084; evalue=5.22e-20; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0060090 | molecular adaptor activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=56.79; coverage=15.084; evalue=5.79e-20; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0061629 | RNA polymerase II-specific DNA-binding transcription factor binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=56.79; coverage=15.084; evalue=5.79e-20; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0140297 | DNA-binding transcription factor binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=56.79; coverage=15.084; evalue=5.22e-20; UniProt GO evidence=TAS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0141221 | histone deacetylase activity, hydrolytic mechanism | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=65.854; coverage=15.27; evalue=1.78e-25; UniProt GO evidence=IEA:UniProtKB-EC | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:1990841 | promoter-specific chromatin binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=56.79; coverage=15.084; evalue=5.79e-20; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| KEGG | ath:AT5G61060 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=67.073; coverage=15.27; evalue=6.02e-25 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ath:AT5G61070 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=65.854; coverage=15.27; evalue=1.78e-25 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | gga:374207 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=56.79; coverage=15.084; evalue=5.22e-20 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | mmu:208727 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=56.79; coverage=15.084; evalue=5.79e-20 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | rno:363287 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=56.79; coverage=15.084; evalue=6.17e-20 | UniProtKB/Swiss-Prot DAT 2026 current_release |