Gene Annotation
Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.
Search Results
| Gene ID | LXL04_009494 |
|---|---|
| Query reference | OH1004 |
| Location | Chr02:127370050-127374690 (-) |
| Description | Similar to PCH2: Pachytene checkpoint protein 2 homolog (Arabidopsis thaliana OX%3D3702) |
| Annotation source assembly | GCA_047496595.1_OSU_TarKok_2.0 |
Functional annotation source: OH1004 · LXL04_009494 · GCA_047496595.1_OSU_TarKok_2.0.
This query returns 20 GO annotations and 4 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.
Arabidopsis / Rice Reference Genes and Papers
Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.
Download references for this gene
Arabidopsis
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
At4g24710 |
Plays a key role in chromosome recombination during meiosis. |
Rice
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
Os04g0479000 |
Plays a key role in chromosome recombination during meiosis. | No verified direct reference in this release |
UniProt: A2XUN8 |
Plays a key role in chromosome recombination during meiosis. | No verified direct reference in this release |
GO / KEGG
These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.
| Type | ID | Name | Namespace | Evidence | Source |
|---|---|---|---|---|---|
| GO | GO:0006302 | double-strand break repair | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=49.764; coverage=66.772; evalue=5.93e-130; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0007094 | mitotic spindle assembly checkpoint signaling | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=49.764; coverage=66.772; evalue=5.93e-130; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0007129 | homologous chromosome pairing at meiosis | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=74.123; coverage=71.811; evalue=0.0; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0007130 | synaptonemal complex assembly | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=74.123; coverage=71.811; evalue=0.0; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0007131 | reciprocal meiotic recombination | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=74.123; coverage=71.811; evalue=0.0; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0007141 | male meiosis I | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=49.764; coverage=66.772; evalue=5.93e-130; UniProt GO evidence=ISO:RGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0007144 | female meiosis I | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=49.764; coverage=66.772; evalue=5.93e-130; UniProt GO evidence=ISO:RGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0007283 | spermatogenesis | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=49.764; coverage=66.772; evalue=5.93e-130; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0007286 | spermatid development | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=49.764; coverage=66.772; evalue=5.93e-130; UniProt GO evidence=ISO:RGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0042138 | meiotic DNA double-strand break formation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=72.158; coverage=67.874; evalue=0.0; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0051026 | chiasma assembly | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=74.123; coverage=71.811; evalue=0.0; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0051598 | meiotic recombination checkpoint signaling | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=74.123; coverage=71.811; evalue=0.0; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000795 | synaptonemal complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=74.123; coverage=71.811; evalue=0.0; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0001673 | male germ cell nucleus | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=49.764; coverage=66.772; evalue=5.93e-130; UniProt GO evidence=ISO:RGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005634 | nucleus | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=74.123; coverage=71.811; evalue=0.0; UniProt GO evidence=ISM:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005694 | chromosome | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=74.123; coverage=71.811; evalue=0.0; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005737 | cytoplasm | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=74.123; coverage=71.811; evalue=0.0; UniProt GO evidence=ISM:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005524 | ATP binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=74.123; coverage=71.811; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0016887 | ATP hydrolysis activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=74.123; coverage=71.811; evalue=0.0; UniProt GO evidence=IEA:InterPro | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0042802 | identical protein binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=49.764; coverage=66.772; evalue=5.93e-130; UniProt GO evidence=ISO:RGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| KEGG | ath:AT4G24710 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=74.123; coverage=71.811; evalue=0.0 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | dosa:Os04g0479000 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=72.158; coverage=67.874; evalue=0.0 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | mmu:69716 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=49.528; coverage=66.772; evalue=2.39e-129 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | rno:292206 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=49.764; coverage=66.772; evalue=5.93e-130 | UniProtKB/Swiss-Prot DAT 2026 current_release |