Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

Download current result

Gene ID	`LXL04_008598`
Query reference	OH1004
Location	Chr02:103790308-103791667 (+)
Description	Similar to HDG1: Homeobox-leucine zipper protein HDG1 (Arabidopsis thaliana OX%3D3702)
Annotation source assembly	GCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_008598 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 19 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g61150`	Probable transcription factor (By similarity).	CFL1, a WW domain protein, regulates cuticle development by modulating the function of HDG1, a class IV homeodomain transcription factor, in rice and Arabidopsis.2011 · DOI: 10.1105/tpc.111.088625 Mutations in epidermis-specific HD-ZIP IV genes affect floral organ identity in Arabidopsis thaliana.2013 · DOI: 10.1111/tpj.12211
`At4g00730`	Probable transcription factor involved in the regulation of the tissue-specific accumulation of anthocyanins and in cellular organization of the primary root.	ANTHOCYANINLESS2, a homeobox gene affecting anthocyanin distribution and root development in Arabidopsis.1999 · DOI: 10.1105/tpc.11.7.1217
`At1g05230`	Probable transcription factor (By similarity).	Mutations in epidermis-specific HD-ZIP IV genes affect floral organ identity in Arabidopsis thaliana.2013 · DOI: 10.1111/tpj.12211

Rice

Reference gene ID	Possible function	Papers / DOI
`Os04g0569100`	Probable transcription factor.	No verified direct reference in this release
`Os02g0674800`	Probable transcription factor.	No verified direct reference in this release

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

Type	ID	Name	Namespace	Evidence	Source
GO	GO:0006351	DNA-templated transcription	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=50.0; coverage=42.786; evalue=1.12e-17; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009827	plant-type cell wall modification	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=47.619; coverage=41.791; evalue=4.65e-15; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010090	trichome morphogenesis	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=40.449; coverage=44.279; evalue=2.02e-11; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010143	cutin biosynthetic process	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=47.619; coverage=41.791; evalue=4.65e-15; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010214	seed coat development	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=40.449; coverage=44.279; evalue=2.02e-11; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0030154	cell differentiation	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=50.0; coverage=42.786; evalue=1.12e-17; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0043481	anthocyanin accumulation in tissues in response to UV light	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=47.619; coverage=41.791; evalue=4.65e-15; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0048354	mucilage biosynthetic process involved in seed coat development	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=40.449; coverage=44.279; evalue=2.02e-11; UniProt GO evidence=IGI:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0048364	root development	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=47.619; coverage=41.791; evalue=4.65e-15; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0048497	maintenance of floral organ identity	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=50.0; coverage=42.786; evalue=1.12e-17; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0048765	root hair cell differentiation	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=47.619; coverage=41.791; evalue=4.65e-15; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0052541	plant-type cell wall cellulose metabolic process	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=40.449; coverage=44.279; evalue=2.02e-11; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:2000144	positive regulation of DNA-templated transcription initiation	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=40.449; coverage=44.279; evalue=2.02e-11; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005634	nucleus	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=50.0; coverage=42.786; evalue=1.12e-17; UniProt GO evidence=ISM:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0000976	transcription cis-regulatory region binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=50.0; coverage=42.786; evalue=1.12e-17; UniProt GO evidence=IPI:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0000981	DNA-binding transcription factor activity, RNA polymerase II-specific	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=50.0; coverage=42.786; evalue=1.12e-17; UniProt GO evidence=IEA:InterPro	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0003677	DNA binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=44.118; coverage=50.746; evalue=2.39e-13; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0003700	DNA-binding transcription factor activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=50.0; coverage=42.786; evalue=1.12e-17; UniProt GO evidence=ISS:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0008289	lipid binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=50.0; coverage=42.786; evalue=1.12e-17; UniProt GO evidence=IEA:InterPro	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT1G05230	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=40.449; coverage=44.279; evalue=2.02e-11	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT3G61150	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=50.0; coverage=42.786; evalue=1.12e-17	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT4G00730	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=47.619; coverage=41.791; evalue=4.65e-15	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	dosa:Os02g0674800	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=46.575; coverage=36.318; evalue=1.16e-11	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	dosa:Os04g0569100	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=44.118; coverage=50.746; evalue=2.39e-13	UniProtKB/Swiss-Prot DAT 2026 current_release