Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene ID	`LXL04_007827`
Query reference	OH1004
Location	Chr02:64192814-64204278 (-)
Description	Similar to MADS26: MADS-box transcription factor 26 (Oryza sativa subsp. japonica OX%3D39947)
Annotation source assembly	GCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_007827 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 17 GO annotations and 4 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g71692`	Probable transcription activator that regulates root development by controlling cell proliferation in root meristem.	An AGAMOUS-related MADS-box gene, XAL1 (AGL12), regulates root meristem cell proliferation and flowering transition in Arabidopsis.2008 · DOI: 10.1104/pp.107.108647
`At2g14210`	Probable transcription factor.	Nitrate and glutamate sensing by plant roots.2005 · DOI: 10.1042/bst0330283 The Arabidopsis NRT1.1 transporter participates in the signaling pathway triggering root colonization of nitrate-rich patches.2006 · DOI: 10.1073/pnas.0605275103 An Arabidopsis MADS box gene that controls nutrient-induced changes in root architecture.1998 · DOI: 10.1126/science.279.5349.407

Rice

Reference gene ID	Possible function	Papers / DOI
`Os08g0112700`	Probable transcription factor.	No verified direct reference in this release
`UniProt: A2YQK9`	Probable transcription factor.	No verified direct reference in this release
`Os12g0206800`	Probable transcription factor.	No verified direct reference in this release

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

Type	ID	Name	Namespace	Evidence	Source
GO	GO:0006351	DNA-templated transcription	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=72.289; coverage=42.784; evalue=8.59e-38; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0006357	regulation of transcription by RNA polymerase II	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=72.289; coverage=42.784; evalue=8.59e-38; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0007584	response to nutrient	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=71.429; coverage=36.082; evalue=1.01e-27; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009908	flower development	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=74.324; coverage=38.144; evalue=2.35e-36; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010167	response to nitrate	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=71.429; coverage=36.082; evalue=1.01e-27; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010228	vegetative to reproductive phase transition of meristem	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=74.324; coverage=38.144; evalue=2.35e-36; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0045944	positive regulation of transcription by RNA polymerase II	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=72.289; coverage=42.784; evalue=8.59e-38; UniProt GO evidence=IEA:InterPro	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0048364	root development	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=74.324; coverage=38.144; evalue=2.35e-36; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0048527	lateral root development	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=71.429; coverage=36.082; evalue=1.01e-27; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0071249	cellular response to nitrate	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=71.429; coverage=36.082; evalue=1.01e-27; UniProt GO evidence=IEP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005634	nucleus	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=72.289; coverage=42.784; evalue=8.59e-38; UniProt GO evidence=IEA:UniProtKB-SubCell	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0000976	transcription cis-regulatory region binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=71.429; coverage=36.082; evalue=1.01e-27; UniProt GO evidence=IPI:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0000977	RNA polymerase II transcription regulatory region sequence-specific DNA binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=72.289; coverage=42.784; evalue=8.59e-38; UniProt GO evidence=IEA:InterPro	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0000978	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=72.289; coverage=42.784; evalue=8.59e-38; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0000981	DNA-binding transcription factor activity, RNA polymerase II-specific	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=72.289; coverage=42.784; evalue=8.59e-38; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0003700	DNA-binding transcription factor activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=72.289; coverage=42.784; evalue=8.59e-38; UniProt GO evidence=IEA:InterPro	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0046983	protein dimerization activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=72.289; coverage=42.784; evalue=8.59e-38; UniProt GO evidence=IEA:InterPro	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT1G71692	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=74.324; coverage=38.144; evalue=2.35e-36	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT2G14210	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=71.429; coverage=36.082; evalue=1.01e-27	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	dosa:Os08g0112700	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=72.289; coverage=42.784; evalue=8.59e-38	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	dosa:Os12g0206800	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=82.857; coverage=36.082; evalue=6.03e-36	UniProtKB/Swiss-Prot DAT 2026 current_release