Gene Annotation
Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.
Search Results
| Gene ID | LXL04_005972 |
|---|---|
| Query reference | OH1004 |
| Location | Chr01:176510793-176511783 (+) |
| Description | Similar to UAF30: Upstream activation factor subunit UAF30 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX%3D559292) |
| Annotation source assembly | GCA_047496595.1_OSU_TarKok_2.0 |
Functional annotation source: OH1004 · LXL04_005972 · GCA_047496595.1_OSU_TarKok_2.0.
This query returns 13 GO annotations and 4 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.
Arabidopsis / Rice Reference Genes and Papers
Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.
Download references for this gene
Arabidopsis
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
At3g51120 |
Zinc finger CCCH domain-containing protein 44. | No verified direct reference in this release |
Rice
No hit for this species in the current source table.
GO / KEGG
These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.
| Type | ID | Name | Namespace | Evidence | Source |
|---|---|---|---|---|---|
| GO | GO:0006325 | chromatin organization | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=44.0; coverage=85.47; evalue=1.96e-17; UniProt GO evidence=IMP:SGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006361 | transcription initiation at RNA polymerase I promoter | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=44.0; coverage=85.47; evalue=1.96e-17; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0042790 | nucleolar large rRNA transcription by RNA polymerase I | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=44.0; coverage=85.47; evalue=1.96e-17; UniProt GO evidence=IDA:ComplexPortal | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0045943 | positive regulation of transcription by RNA polymerase I | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=44.0; coverage=85.47; evalue=1.96e-17; UniProt GO evidence=IDA:ComplexPortal | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000500 | RNA polymerase I upstream activating factor complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=44.0; coverage=85.47; evalue=1.96e-17; UniProt GO evidence=IDA:SGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005634 | nucleus | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=44.0; coverage=85.47; evalue=1.96e-17; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005730 | nucleolus | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=44.0; coverage=85.47; evalue=1.96e-17; UniProt GO evidence=IDA:SGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005737 | cytoplasm | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=44.286; coverage=59.829; evalue=4.07e-14; UniProt GO evidence=HDA:SGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005829 | cytosol | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=52.727; coverage=47.009; evalue=1.13e-12; UniProt GO evidence=HDA:PomBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0001165 | RNA polymerase I cis-regulatory region sequence-specific DNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=44.0; coverage=85.47; evalue=1.96e-17; UniProt GO evidence=IDA:SGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0001181 | RNA polymerase I general transcription initiation factor activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=44.0; coverage=85.47; evalue=1.96e-17; UniProt GO evidence=IMP:SGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003677 | DNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=36.264; coverage=77.778; evalue=3.81e-07; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0008270 | zinc ion binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=36.264; coverage=77.778; evalue=3.81e-07; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| KEGG | sce:YMR233W | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=44.286; coverage=59.829; evalue=4.07e-14 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | sce:YOR295W | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=44.0; coverage=85.47; evalue=1.96e-17 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | spo:2539310 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=52.727; coverage=47.009; evalue=1.13e-12 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | vg:4156281 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=36.559; coverage=79.487; evalue=1.38e-06 | UniProtKB/Swiss-Prot DAT 2026 current_release |