Gene Annotation
Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.
Search Results
| Gene ID | LXL04_005197 |
|---|---|
| Query reference | OH1004 |
| Location | Chr01:157558701-157563454 (-) |
| Description | Similar to rbrA: Probable E3 ubiquitin-protein ligase rbrA (Dictyostelium discoideum OX%3D44689) |
| Annotation source assembly | GCA_047496595.1_OSU_TarKok_2.0 |
Functional annotation source: OH1004 · LXL04_005197 · GCA_047496595.1_OSU_TarKok_2.0.
This query returns 27 GO annotations and 3 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.
Arabidopsis / Rice Reference Genes and Papers
Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.
Download references for this gene
Arabidopsis
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
At2g26130 |
Acts as an E3 ubiquitin-protein ligase, or as part of E3 complex, which accepts ubiquitin from specific E2 ubiquitin-conjugating enzymes and then transfers it to substrates. | |
At4g01020 |
ATP-dependent RNA helicase DEAH11, chloroplastic. | No verified direct reference in this release |
At2g31760 |
Might act as an E3 ubiquitin-protein ligase, or as part of E3 complex, which accepts ubiquitin from specific E2 ubiquitin-conjugating enzymes and then transfers it to substrates. | No verified direct reference in this release |
Rice
No hit for this species in the current source table.
GO / KEGG
These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.
| Type | ID | Name | Namespace | Evidence | Source |
|---|---|---|---|---|---|
| GO | GO:0000209 | protein polyubiquitination | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=36.695; coverage=33.584; evalue=6.65e-65; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006511 | ubiquitin-dependent protein catabolic process | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=36.695; coverage=33.584; evalue=6.65e-65; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009738 | abscisic acid-activated signaling pathway | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=36.695; coverage=33.584; evalue=6.65e-65; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009740 | gibberellic acid mediated signaling pathway | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=36.695; coverage=33.584; evalue=6.65e-65; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009788 | negative regulation of abscisic acid-activated signaling pathway | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=36.695; coverage=33.584; evalue=6.65e-65; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0010431 | seed maturation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=36.695; coverage=33.584; evalue=6.65e-65; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0010476 | gibberellin mediated signaling pathway | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=36.695; coverage=33.584; evalue=6.65e-65; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0016567 | protein ubiquitination | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=27.984; coverage=22.86; evalue=9.22e-16; UniProt GO evidence=IEA:UniProtKB-UniPathway | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0030435 | sporulation resulting in formation of a cellular spore | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=27.984; coverage=22.86; evalue=9.22e-16; UniProt GO evidence=IMP:dictyBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0140547 | acquisition of seed longevity | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=36.695; coverage=33.584; evalue=6.65e-65; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000151 | ubiquitin ligase complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=36.695; coverage=33.584; evalue=6.65e-65; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005634 | nucleus | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=36.695; coverage=33.584; evalue=6.65e-65; UniProt GO evidence=ISM:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005737 | cytoplasm | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=36.695; coverage=33.584; evalue=6.65e-65; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005886 | plasma membrane | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=36.695; coverage=33.584; evalue=6.65e-65; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009507 | chloroplast | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=25.5; coverage=18.815; evalue=8.3e-14; UniProt GO evidence=IEA:UniProtKB-SubCell | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009705 | plant-type vacuole membrane | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=36.695; coverage=33.584; evalue=6.65e-65; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003676 | nucleic acid binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=36.695; coverage=33.584; evalue=6.65e-65; UniProt GO evidence=IEA:InterPro | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003723 | RNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=25.5; coverage=18.815; evalue=8.3e-14; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003724 | RNA helicase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=25.5; coverage=18.815; evalue=8.3e-14; UniProt GO evidence=IEA:UniProtKB-EC | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0004386 | helicase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=25.5; coverage=18.815; evalue=8.3e-14; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0004523 | RNA-DNA hybrid ribonuclease activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=36.695; coverage=33.584; evalue=6.65e-65; UniProt GO evidence=IEA:InterPro | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005524 | ATP binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=25.5; coverage=18.815; evalue=8.3e-14; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0008270 | zinc ion binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=36.695; coverage=33.584; evalue=6.65e-65; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0016740 | transferase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=25.5; coverage=18.815; evalue=8.3e-14; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0016887 | ATP hydrolysis activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=25.5; coverage=18.815; evalue=8.3e-14; UniProt GO evidence=IEA:RHEA | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0031624 | ubiquitin conjugating enzyme binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=36.695; coverage=33.584; evalue=6.65e-65; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0061630 | ubiquitin protein ligase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=36.695; coverage=33.584; evalue=6.65e-65; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| KEGG | ath:AT2G26130 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=36.695; coverage=33.584; evalue=6.65e-65 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ath:AT4G01020 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=25.5; coverage=18.815; evalue=8.3e-14 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ddi:DDB_G0286961 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=27.984; coverage=22.86; evalue=9.22e-16 | UniProtKB/Swiss-Prot DAT 2026 current_release |