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Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene IDLXL04_003892
Query referenceOH1004
LocationChr01:112258215-112261633 (+)
DescriptionSimilar to APRR2: Two-component response regulator-like APRR2 (Arabidopsis thaliana OX%3D3702)
Annotation source assemblyGCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_003892 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 26 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At4g18020 Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. No verified direct reference in this release
At5g44190 Transcriptional activator that functions with GLK1 to promote chloroplast development.
Arabidopsis GARP transcriptional activators interact with the Pro-rich activation domain shared by G-box-binding bZIP factors.2002 · DOI: 10.1093/pcp/pcf011
GLK gene pairs regulate chloroplast development in diverse plant species.2002 · DOI: 10.1046/j.1365-313x.2002.01390.x
GLK transcription factors regulate chloroplast development in a cell-autonomous manner.2008 · DOI: 10.1111/j.1365-313x.2008.03616.x
GLK transcription factors coordinate expression of the photosynthetic apparatus in Arabidopsis.2009 · DOI: 10.1105/tpc.108.065250
Specialization of the Golden2-like regulatory pathway during land plant evolution.2009 · DOI: 10.1111/j.1469-8137.2009.02829.x
ORE1 balances leaf senescence against maintenance by antagonizing G2-like-mediated transcription.2013 · DOI: 10.1038/embor.2013.24
At2g20570 Transcriptional activator that functions with GLK2 to promote chloroplast development.
Arabidopsis GARP transcriptional activators interact with the Pro-rich activation domain shared by G-box-binding bZIP factors.2002 · DOI: 10.1093/pcp/pcf011
GLK gene pairs regulate chloroplast development in diverse plant species.2002 · DOI: 10.1046/j.1365-313x.2002.01390.x
The GLK1 'regulon' encodes disease defense related proteins and confers resistance to Fusarium graminearum in Arabidopsis.2007 · DOI: 10.1016/j.bbrc.2007.05.084
GLK transcription factors regulate chloroplast development in a cell-autonomous manner.2008 · DOI: 10.1111/j.1365-313x.2008.03616.x
GLK transcription factors coordinate expression of the photosynthetic apparatus in Arabidopsis.2009 · DOI: 10.1105/tpc.108.065250
Specialization of the Golden2-like regulatory pathway during land plant evolution.2009 · DOI: 10.1111/j.1469-8137.2009.02829.x
Coordination of plastid protein import and nuclear gene expression by plastid-to-nucleus retrograde signaling.2009 · DOI: 10.1104/pp.109.145987
ORE1 balances leaf senescence against maintenance by antagonizing G2-like-mediated transcription.2013 · DOI: 10.1038/embor.2013.24
At4g16110 Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'.
The response regulator ARR2: a pollen-specific transcription factor involved in the expression of nuclear genes for components of mitochondrial complex I in Arabidopsis.2001 · DOI: 10.1007/s004380000400
Two-component circuitry in Arabidopsis cytokinin signal transduction.2001 · DOI: 10.1038/35096500
The response regulator 2 mediates ethylene signalling and hormone signal integration in Arabidopsis.2004 · DOI: 10.1038/sj.emboj.7600337
Cytokinin-mediated control of leaf longevity by AHK3 through phosphorylation of ARR2 in Arabidopsis.2006 · DOI: 10.1073/pnas.0505150103

Rice

Reference gene IDPossible functionPapers / DOI
Os01g0239000 Probable transcriptional activator that promotes chloroplast development. No verified direct reference in this release

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

TypeIDNameNamespaceEvidenceSource
GOGO:0000160phosphorelay signal transduction systemBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=46.154; coverage=109.823; evalue=4.73e-113; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0006351DNA-templated transcriptionBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=46.154; coverage=109.823; evalue=4.73e-113; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0007165signal transductionBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=30.986; coverage=69.745; evalue=1.86e-25; UniProt GO evidence=IEP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0007623circadian rhythmBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=46.154; coverage=109.823; evalue=4.73e-113; UniProt GO evidence=TAS:TIGRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009658chloroplast organizationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=39.844; coverage=50.295; evalue=2.27e-27; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009723response to ethyleneBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=46.729; coverage=21.022; evalue=6.85e-18; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009735response to cytokininBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=46.729; coverage=21.022; evalue=6.85e-18; UniProt GO evidence=IGI:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009736cytokinin-activated signaling pathwayBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=46.729; coverage=21.022; evalue=6.85e-18; UniProt GO evidence=TAS:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009873ethylene-activated signaling pathwayBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=46.729; coverage=21.022; evalue=6.85e-18; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009910negative regulation of flower developmentBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=39.844; coverage=50.295; evalue=2.27e-27; UniProt GO evidence=IGI:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0010082regulation of root meristem growthBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=46.729; coverage=21.022; evalue=6.85e-18; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0010119regulation of stomatal movementBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=46.729; coverage=21.022; evalue=6.85e-18; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0010150leaf senescenceBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=46.729; coverage=21.022; evalue=6.85e-18; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0010380regulation of chlorophyll biosynthetic processBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=39.844; coverage=50.295; evalue=2.27e-27; UniProt GO evidence=IGI:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0045893positive regulation of DNA-templated transcriptionBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=46.154; coverage=109.823; evalue=4.73e-113; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0048364root developmentBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=46.729; coverage=21.022; evalue=6.85e-18; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0071368cellular response to cytokinin stimulusBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=46.729; coverage=21.022; evalue=6.85e-18; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0080113regulation of seed growthBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=46.729; coverage=21.022; evalue=6.85e-18; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:1900056negative regulation of leaf senescenceBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=39.844; coverage=50.295; evalue=2.27e-27; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005634nucleusCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=46.154; coverage=109.823; evalue=4.73e-113; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005737cytoplasmCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=46.154; coverage=109.823; evalue=4.73e-113; UniProt GO evidence=ISM:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005829cytosolCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=46.729; coverage=21.022; evalue=6.85e-18; UniProt GO evidence=HDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0000156phosphorelay response regulator activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=46.729; coverage=21.022; evalue=6.85e-18; UniProt GO evidence=ISS:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0000976transcription cis-regulatory region bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=46.154; coverage=109.823; evalue=4.73e-113; UniProt GO evidence=IPI:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0003677DNA bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=46.729; coverage=21.022; evalue=6.85e-18; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0003700DNA-binding transcription factor activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=46.154; coverage=109.823; evalue=4.73e-113; UniProt GO evidence=ISS:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT2G20570KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=30.986; coverage=69.745; evalue=1.86e-25UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT4G16110KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=46.729; coverage=21.022; evalue=6.85e-18UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT4G18020KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=46.154; coverage=109.823; evalue=4.73e-113UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT5G44190KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=39.844; coverage=50.295; evalue=2.27e-27UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGdosa:Os01g0239000KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=48.246; coverage=22.397; evalue=2.11e-24UniProtKB/Swiss-Prot DAT 2026 current_release