Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene ID	`LXL04_002782`
Query reference	OH1004
Location	Chr01:58214598-58222039 (+)
Description	Similar to DCL4: Dicer-like protein 4 (Arabidopsis thaliana OX%3D3702)
Annotation source assembly	GCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_002782 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 23 GO annotations and 6 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g20320`	Ribonuclease (RNase) III involved in RNA-mediated post- transcriptional gene silencing (PTGS).	Partially redundant functions of Arabidopsis DICER-like enzymes and a role for DCL4 in producing trans-acting siRNAs.2005 · DOI: 10.1016/j.cub.2005.07.024 DICER-LIKE 4 functions in trans-acting small interfering RNA biogenesis and vegetative phase change in Arabidopsis thaliana.2005 · DOI: 10.1073/pnas.0506426102 A pathway for the biogenesis of trans-acting siRNAs in Arabidopsis.2005 · DOI: 10.1101/gad.1352605 DICER-LIKE 4 is required for RNA interference and produces the 21-nucleotide small interfering RNA component of the plant cell-to-cell silencing signal.2005 · DOI: 10.1038/ng1675 DRB4-dependent TAS3 trans-acting siRNAs control leaf morphology through AGO7.2006 · DOI: 10.1016/j.cub.2006.03.035 An antagonistic function for Arabidopsis DCL2 in development and a new function for DCL4 in generating viral siRNAs.2006 · DOI: 10.1038/sj.emboj.7601217 Suppression of antiviral silencing by cucumber mosaic virus 2b protein in Arabidopsis is associated with drastically reduced accumulation of three classes of viral small interfering RNAs.2007 · DOI: 10.1105/tpc.106.047449 Transitivity in Arabidopsis can be primed, requires the redundant action of the antiviral Dicer-like 4 and Dicer-like 2, and is compromised by viral-encoded suppressor proteins.2007 · DOI: 10.1261/rna.541307 A novel class of bacteria-induced small RNAs in Arabidopsis.2007 · DOI: 10.1101/gad.1595107 Arabidopsis DRB4, AGO1, AGO7, and RDR6 participate in a DCL4-initiated antiviral RNA silencing pathway negatively regulated by DCL1.2008 · DOI: 10.1073/pnas.0805760105
`At3g03300`	Ribonuclease (RNase) III involved in RNA-mediated post-transcriptional gene silencing (PTGS).	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os04g0509300`	Involved in the RNA silencing pathway.	The small interfering RNA production pathway is required for shoot meristem initiation in rice.2007 · DOI: 10.1073/pnas.0704339104 Oryza sativa dicer-like4 reveals a key role for small interfering RNA silencing in plant development.2007 · DOI: 10.1105/tpc.107.052209
`Os01g0909200`	Probably involved in the RNA silencing pathway.	No verified direct reference in this release
`Os10g0485600`	Probably involved in the RNA silencing pathway.	No verified direct reference in this release

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

Type	ID	Name	Namespace	Evidence	Source
GO	GO:0006353	DNA-templated transcription termination	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=51.358; coverage=98.901; evalue=0.0; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0006995	cellular response to nitrogen starvation	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=33.104; coverage=88.889; evalue=0.0; UniProt GO evidence=TAS:FlyBase	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009616	RNAi-mediated antiviral immune response	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=51.358; coverage=98.901; evalue=0.0; UniProt GO evidence=IGI:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009944	polarity specification of adaxial/abaxial axis	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=47.226; coverage=101.221; evalue=0.0; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010050	vegetative phase change	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=51.358; coverage=98.901; evalue=0.0; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010267	ta-siRNA processing	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=51.358; coverage=98.901; evalue=0.0; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010492	maintenance of shoot apical meristem identity	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=47.226; coverage=101.221; evalue=0.0; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010599	lsiRNA processing	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=51.358; coverage=98.901; evalue=0.0; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0030422	siRNA processing	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=51.358; coverage=98.901; evalue=0.0; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0044027	negative regulation of gene expression via chromosomal CpG island methylation	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=51.358; coverage=98.901; evalue=0.0; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0048608	reproductive structure development	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=47.226; coverage=101.221; evalue=0.0; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0051214	RNAi-mediated antiviral immunity against RNA virus	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=51.358; coverage=98.901; evalue=0.0; UniProt GO evidence=IGI:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0051607	defense response to virus	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=51.358; coverage=98.901; evalue=0.0; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0070549	siRNA-mediated gene silencing by inhibition of translation	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=33.104; coverage=88.889; evalue=0.0; UniProt GO evidence=IMP:FlyBase	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005634	nucleus	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=51.358; coverage=98.901; evalue=0.0; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005737	cytoplasm	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=51.358; coverage=98.901; evalue=0.0; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005829	cytosol	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=51.358; coverage=98.901; evalue=0.0; UniProt GO evidence=HDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0036464	cytoplasmic ribonucleoprotein granule	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=51.358; coverage=98.901; evalue=0.0; UniProt GO evidence=IDA:FlyBase	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0003723	RNA binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=51.358; coverage=98.901; evalue=0.0; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0004386	helicase activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=51.358; coverage=98.901; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0004525	ribonuclease III activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=51.358; coverage=98.901; evalue=0.0; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005524	ATP binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=51.358; coverage=98.901; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0046872	metal ion binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=51.358; coverage=98.901; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT3G03300	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=33.104; coverage=88.889; evalue=0.0	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT5G20320	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=51.358; coverage=98.901; evalue=0.0	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	dosa:Os01g0909200	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=33.411; coverage=105.067; evalue=0.0	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	dosa:Os04g0509300	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=47.226; coverage=101.221; evalue=0.0	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	dosa:Os10g0485600	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=31.39; coverage=100.549; evalue=0.0	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	osa:4324864	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=33.411; coverage=105.067; evalue=0.0	UniProtKB/Swiss-Prot DAT 2026 current_release