Gene Annotation
Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.
Search Results
| Gene ID | LXL04_002771 |
|---|---|
| Query reference | OH1004 |
| Location | Chr01:57984346-57989723 (-) |
| Description | Similar to RHY1A: Probable E3 ubiquitin-protein ligase RHY1A (Arabidopsis thaliana OX%3D3702) |
| Annotation source assembly | GCA_047496595.1_OSU_TarKok_2.0 |
Functional annotation source: OH1004 · LXL04_002771 · GCA_047496595.1_OSU_TarKok_2.0.
This query returns 23 GO annotations and 6 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.
Arabidopsis / Rice Reference Genes and Papers
Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.
Download references for this gene
Arabidopsis
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
At1g49850 |
Probable E3 ubiquitin-protein ligase that may possess E3 ubiquitin ligase activity in vitro. | No verified direct reference in this release |
At3g19950 |
E3 ubiquitin-protein ligase which accepts ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates. | No verified direct reference in this release |
Rice
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
Os05g0488800 |
Possesses E3 ubiqutin-protein ligase activity in vitro. |
GO / KEGG
These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.
| Type | ID | Name | Namespace | Evidence | Source |
|---|---|---|---|---|---|
| GO | GO:0000209 | protein polyubiquitination | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=34.177; coverage=42.935; evalue=1.75e-11; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006511 | ubiquitin-dependent protein catabolic process | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=31.884; coverage=75.0; evalue=2.55e-11; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006888 | endoplasmic reticulum to Golgi vesicle-mediated transport | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=52.083; coverage=26.087; evalue=8.38e-11; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006893 | Golgi to plasma membrane transport | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=52.083; coverage=26.087; evalue=8.38e-11; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0016567 | protein ubiquitination | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=34.177; coverage=42.935; evalue=1.75e-11; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0034122 | negative regulation of toll-like receptor signaling pathway | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=52.083; coverage=26.087; evalue=8.38e-11; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0034123 | positive regulation of toll-like receptor signaling pathway | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=52.083; coverage=26.087; evalue=8.38e-11; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0034142 | toll-like receptor 4 signaling pathway | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=52.083; coverage=26.087; evalue=8.38e-11; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0042059 | negative regulation of epidermal growth factor receptor signaling pathway | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=52.083; coverage=26.087; evalue=8.38e-11; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0043162 | ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=52.083; coverage=26.087; evalue=8.38e-11; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0051865 | protein autoubiquitination | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=34.177; coverage=42.935; evalue=1.75e-11; UniProt GO evidence=ISS:FlyBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0070534 | protein K63-linked ubiquitination | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=52.083; coverage=26.087; evalue=8.38e-11; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0070936 | protein K48-linked ubiquitination | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=52.083; coverage=26.087; evalue=8.38e-11; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0070979 | protein K11-linked ubiquitination | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=52.083; coverage=26.087; evalue=8.38e-11; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005634 | nucleus | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=31.884; coverage=75.0; evalue=2.55e-11; UniProt GO evidence=ISM:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005737 | cytoplasm | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=34.177; coverage=42.935; evalue=1.75e-11; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005783 | endoplasmic reticulum | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=52.083; coverage=26.087; evalue=8.38e-11; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005794 | Golgi apparatus | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=52.083; coverage=26.087; evalue=8.38e-11; UniProt GO evidence=IEA:UniProtKB-SubCell | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005829 | cytosol | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=52.083; coverage=26.087; evalue=8.38e-11; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0045335 | phagocytic vesicle | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=52.083; coverage=26.087; evalue=8.38e-11; UniProt GO evidence=IEA:UniProtKB-SubCell | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0004842 | ubiquitin-protein transferase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=34.177; coverage=42.935; evalue=1.75e-11; UniProt GO evidence=ISS:FlyBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0008270 | zinc ion binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=34.177; coverage=42.935; evalue=1.75e-11; UniProt GO evidence=ISM:FlyBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0061630 | ubiquitin protein ligase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=34.177; coverage=42.935; evalue=1.75e-11; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| KEGG | ath:AT1G49850 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=31.884; coverage=75.0; evalue=2.55e-11 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ath:AT3G19950 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=51.064; coverage=25.543; evalue=1.01e-10 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | dme:Dmel_CG11982 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=34.177; coverage=42.935; evalue=1.75e-11 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | dosa:Os05g0488800 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=52.381; coverage=22.826; evalue=5.49e-11 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | mmu:67845 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=52.083; coverage=26.087; evalue=8.38e-11 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | osa:4339152 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=52.381; coverage=22.826; evalue=5.49e-11 | UniProtKB/Swiss-Prot DAT 2026 current_release |