Gene Annotation
Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.
Search Results
| Gene ID | LXL04_002546 |
|---|---|
| Query reference | OH1004 |
| Location | Chr01:51364040-51369043 (+) |
| Description | Similar to NYC1: Probable chlorophyll(ide) b reductase NYC1%2C chloroplastic (Oryza sativa subsp. japonica OX%3D39947) |
| Annotation source assembly | GCA_047496595.1_OSU_TarKok_2.0 |
Functional annotation source: OH1004 · LXL04_002546 · GCA_047496595.1_OSU_TarKok_2.0.
This query returns 8 GO annotations and 3 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.
Arabidopsis / Rice Reference Genes and Papers
Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.
Download references for this gene
Arabidopsis
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
At4g13250 |
Involved in chlorophyll b degradation. | |
At5g04900 |
Required for chlorophyll b degradation. | No verified direct reference in this release |
Rice
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
Os01g0227100 |
Required for proper chloroplast degradation. | No verified direct reference in this release |
Os03g0654600 |
Required for chlorophyll b degradation. | No verified direct reference in this release |
GO / KEGG
These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.
| Type | ID | Name | Namespace | Evidence | Source |
|---|---|---|---|---|---|
| GO | GO:0010304 | PSII associated light-harvesting complex II catabolic process | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=73.432; coverage=46.805; evalue=3.23e-132; UniProt GO evidence=IMP:Gramene | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0015996 | chlorophyll catabolic process | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=73.432; coverage=46.805; evalue=3.23e-132; UniProt GO evidence=IMP:Gramene | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005886 | plasma membrane | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=48.031; coverage=21.934; evalue=1.38e-26; UniProt GO evidence=HDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009507 | chloroplast | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=83.796; coverage=37.306; evalue=3.38e-128; UniProt GO evidence=IC:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009535 | chloroplast thylakoid membrane | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=73.432; coverage=46.805; evalue=3.23e-132; UniProt GO evidence=IEA:UniProtKB-SubCell | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009536 | plastid | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=73.432; coverage=46.805; evalue=3.23e-132; UniProt GO evidence=IDA:Gramene | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0016491 | oxidoreductase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=73.432; coverage=46.805; evalue=3.23e-132; UniProt GO evidence=IDA:Gramene | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0034256 | chlorophyll(ide) b reductase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=73.432; coverage=46.805; evalue=3.23e-132; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| KEGG | ath:AT4G13250 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=83.796; coverage=37.306; evalue=3.38e-128 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ath:AT5G04900 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=48.031; coverage=21.934; evalue=1.38e-26 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | dosa:Os01g0227100 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=73.432; coverage=46.805; evalue=3.23e-132 | UniProtKB/Swiss-Prot DAT 2026 current_release |