Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene ID	`LXL04_002279`
Query reference	OH1004
Location	Chr01:45188763-45190628 (+)
Description	Similar to Pectinesterase 3 (Citrus sinensis OX%3D2711)
Annotation source assembly	GCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_002279 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 23 GO annotations and 4 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g53830`	Acts in the modification of cell walls via demethylesterification of cell wall pectin.	No verified direct reference in this release
`At3g14310`	Acts in the modification of cell walls via demethylesterification of cell wall pectin.	Pectin methylesterase is induced in Arabidopsis upon infection and is necessary for a successful colonization by necrotrophic pathogens.2011 · DOI: 10.1094/mpmi-07-10-0157 A mutation in the Arabidopsis thaliana cell wall biosynthesis gene pectin methylesterase 3 as well as its aberrant expression cause hypersensitivity specifically to Zn.2013 · DOI: 10.1111/tpj.12279 Tuning of Pectin Methylesterification: PECTIN METHYLESTERASE INHIBITOR 7 MODULATES THE PROCESSIVE ACTIVITY OF CO-EXPRESSED PECTIN METHYLESTERASE 3 IN A pH-DEPENDENT MANNER.2015 · DOI: 10.1074/jbc.m115.639534 AtPME3, a ubiquitous cell wall pectin methylesterase of Arabidopsis thaliana, alters the metabolism of cruciferin seed storage proteins during post-germinative growth of seedlings.2017 · DOI: 10.1093/jxb/erx023

Rice

No hit for this species in the current source table.

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

Type	ID	Name	Namespace	Evidence	Source
GO	GO:0009617	response to bacterium	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=40.036; coverage=93.3; evalue=1.31e-124; UniProt GO evidence=IEP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009620	response to fungus	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=40.036; coverage=93.3; evalue=1.31e-124; UniProt GO evidence=IEP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009624	response to nematode	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=40.036; coverage=93.3; evalue=1.31e-124; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010043	response to zinc ion	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=40.036; coverage=93.3; evalue=1.31e-124; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010187	negative regulation of seed germination	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=40.036; coverage=93.3; evalue=1.31e-124; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010468	regulation of gene expression	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=40.036; coverage=93.3; evalue=1.31e-124; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0042545	cell wall modification	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=42.963; coverage=90.452; evalue=1.44e-139; UniProt GO evidence=IEA:InterPro	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0042742	defense response to bacterium	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=40.036; coverage=93.3; evalue=1.31e-124; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0045490	pectin catabolic process	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=42.963; coverage=90.452; evalue=1.44e-139; UniProt GO evidence=IEA:UniProtKB-UniPathway	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0048364	root development	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=40.036; coverage=93.3; evalue=1.31e-124; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0050829	defense response to Gram-negative bacterium	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=40.036; coverage=93.3; evalue=1.31e-124; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0050832	defense response to fungus	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=40.036; coverage=93.3; evalue=1.31e-124; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0051510	regulation of unidimensional cell growth	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=40.036; coverage=93.3; evalue=1.31e-124; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0080147	root hair cell development	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=40.036; coverage=93.3; evalue=1.31e-124; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005576	extracellular region	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=41.373; coverage=90.285; evalue=4.97e-127; UniProt GO evidence=ISS:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005737	cytoplasm	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=40.036; coverage=93.3; evalue=1.31e-124; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005829	cytosol	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=40.036; coverage=93.3; evalue=1.31e-124; UniProt GO evidence=HDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009505	plant-type cell wall	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=41.373; coverage=90.285; evalue=4.97e-127; UniProt GO evidence=HDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0048046	apoplast	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=40.036; coverage=93.3; evalue=1.31e-124; UniProt GO evidence=HDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0003729	mRNA binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=40.036; coverage=93.3; evalue=1.31e-124; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0004857	enzyme inhibitor activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=42.963; coverage=90.452; evalue=1.44e-139; UniProt GO evidence=IEA:InterPro	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0030599	pectinesterase activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=42.963; coverage=90.452; evalue=1.44e-139; UniProt GO evidence=IEA:UniProtKB-EC	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0046910	pectinesterase inhibitor activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=40.335; coverage=90.117; evalue=5.95e-129; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT1G53830	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=41.373; coverage=90.285; evalue=4.97e-127	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT3G14310	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=40.036; coverage=93.3; evalue=1.31e-124	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	cit:102578056	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=42.222; coverage=90.452; evalue=6.99e-132	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	sly:544016	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=40.335; coverage=90.117; evalue=5.95e-129	UniProtKB/Swiss-Prot DAT 2026 current_release