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Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene IDLXL04_000366
Query referenceOH1004
LocationChr01:6699907-6704505 (-)
DescriptionSimilar to VLN2: Villin-2 (Arabidopsis thaliana OX%3D3702)
Annotation source assemblyGCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_000366 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 21 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At2g41740 May act as a Ca²⁺-regulated actin-binding protein.
Arabidopsis VILLIN2 and VILLIN3 are required for the generation of thick actin filament bundles and for directional organ growth.2012 · DOI: 10.1104/pp.111.192385
Arabidopsis VILLIN2 and VILLIN3 act redundantly in sclerenchyma development via bundling of actin filaments.2012 · DOI: 10.1111/j.1365-313x.2012.05044.x
Arabidopsis villins promote actin turnover at pollen tube tips and facilitate the construction of actin collars.2013 · DOI: 10.1105/tpc.113.110940
At3g57410 Binds actin and actin bundles independently of Ca²⁺, but severs actin filaments in a calcium-dependent manner.
Arabidopsis VILLIN1 and VILLIN3 have overlapping and distinct activities in actin bundle formation and turnover.2010 · DOI: 10.1105/tpc.110.076240
Arabidopsis VILLIN2 and VILLIN3 are required for the generation of thick actin filament bundles and for directional organ growth.2012 · DOI: 10.1104/pp.111.192385
Arabidopsis VILLIN2 and VILLIN3 act redundantly in sclerenchyma development via bundling of actin filaments.2012 · DOI: 10.1111/j.1365-313x.2012.05044.x
At4g30160 Binds actin and actin bundles independently of Ca²⁺, but caps filament barbed ends and severs filaments in a calcium-dependent manner.
Arabidopsis VILLIN4 is involved in root hair growth through regulating actin organization in a Ca2+-dependent manner.2011 · DOI: 10.1111/j.1469-8137.2010.03632.x
The universal bundling activity of AtVLN4 in diffusely growing cells.2011 · DOI: 10.4161/psb.6.9.16501
At5g57320 Major actin filament stabilizing factor and regulator of actin dynamics.
Arabidopsis VILLIN5, an actin filament bundling and severing protein, is necessary for normal pollen tube growth.2010 · DOI: 10.1105/tpc.110.076257
Arabidopsis villins promote actin turnover at pollen tube tips and facilitate the construction of actin collars.2013 · DOI: 10.1105/tpc.113.110940

Rice

Reference gene IDPossible functionPapers / DOI
Os03g0356700 Ca(2+)-regulated actin-binding protein (By similarity).
VLN2 Regulates Plant Architecture by Affecting Microfilament Dynamics and Polar Auxin Transport in Rice.2015 · DOI: 10.1105/tpc.15.00581

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

TypeIDNameNamespaceEvidenceSource
GOGO:0001558regulation of cell growthBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=55.321; coverage=106.297; evalue=0.0; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0007015actin filament organizationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=55.321; coverage=106.297; evalue=0.0; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009630gravitropismBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=55.321; coverage=106.297; evalue=0.0; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009734auxin-activated signaling pathwayBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=55.321; coverage=106.297; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0030042actin filament depolymerizationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=43.644; coverage=106.617; evalue=0.0; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0048767root hair elongationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=43.644; coverage=106.617; evalue=0.0; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0051014actin filament severingBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=57.688; coverage=106.19; evalue=0.0; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0051017actin filament bundle assemblyBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=57.688; coverage=106.19; evalue=0.0; UniProt GO evidence=IGI:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0051693actin filament cappingBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=57.688; coverage=106.19; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0051764actin crosslink formationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=43.644; coverage=106.617; evalue=0.0; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0099636cytoplasmic streamingBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=43.644; coverage=106.617; evalue=0.0; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:2000012regulation of auxin polar transportBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=55.321; coverage=106.297; evalue=0.0; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005634nucleusCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=43.644; coverage=106.617; evalue=0.0; UniProt GO evidence=ISM:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005737cytoplasmCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=57.688; coverage=106.19; evalue=0.0; UniProt GO evidence=ISM:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005829cytosolCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=57.688; coverage=106.19; evalue=0.0; UniProt GO evidence=HDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005884actin filamentCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=56.491; coverage=105.229; evalue=0.0; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005886plasma membraneCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=43.644; coverage=106.617; evalue=0.0; UniProt GO evidence=HDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0015629actin cytoskeletonCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=57.688; coverage=106.19; evalue=0.0; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0032432actin filament bundleCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=55.321; coverage=106.297; evalue=0.0; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0003729mRNA bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=57.688; coverage=106.19; evalue=0.0; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0051015actin filament bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=57.688; coverage=106.19; evalue=0.0; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT2G41740KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=57.688; coverage=106.19; evalue=0.0UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT3G57410KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=56.491; coverage=105.229; evalue=0.0UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT4G30160KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=43.644; coverage=106.617; evalue=0.0UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT5G57320KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=41.236; coverage=105.336; evalue=0.0UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGdosa:Os03g0356700KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=55.321; coverage=106.297; evalue=0.0UniProtKB/Swiss-Prot DAT 2026 current_release