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橡胶草转录因子结合位点预测

基于橡胶草转录因子 binding motif，对提交 DNA 序列或基因上游 4000 bp 预测可能的转录因子结合位点。预测结果属于 motif 支持的计算候选证据，不等同于已实验证实的真实调控关系。

442motifs
45224上游序列
4000 bp预测生成长度

按基因 ID 预测上游 4000 bp

示例 TkA01G000070 LXL04_000004

提交 DNA 序列预测

示例 CDS

候选结合位点

提交序列长度
38 bp
阈值
0.95
motif 来源
JASPAR2024 CORE plants non-redundant

下载当前查询结果 TSV

完整候选位点总数：52

DOF1.8 / MA0981.2 / Dof: 18 个候选 TF 基因; 1 个位点

参考 TF: DOF1.5;DOF1.7;DOF5.8;DOF1.3;DOF1.1;DOF1; 置信度: high

TkA03G519950 TkA08G158380 TkA06G156760 TkA02G499520 TkA05G347990 TkA08G106170 TkA03G348550 TkA07G419940 TkA04G044830 TkA04G045600 TkA03G384240 TkA03G385860 TkA01G603240 TkA08G051130 TkA05G407520 TkA06G476300 TkA08G003540 TkA07G314540
DOF2.4 / MA0982.2 / Dof: 11 个候选 TF 基因; 1 个位点

参考 TF: DOF3.4;DOF2.2;DOF5.4;DOF2.1;DOF4.4; 置信度: high

TkA06G156760 TkA05G432650 TkA07G411300 TkA08G109250 TkA04G044830 TkA04G045600 TkA05G351190 TkA01G076090 TkA08G051130 TkA01G603240 TkA03G514870
DOF5.6 / MA0983.2 / Dof: 18 个候选 TF 基因; 1 个位点

参考 TF: DOF5.3;DOF5.7;DOF3.6;DOF5.8;DOF5.4;DOF4.6; 置信度: high

TkA01G480580 TkA08G220950 TkA06G097690 TkA03G169860 TkA04G044830 TkA04G045600 TkA08G051130 TkA05G432650 TkA06G156760 TkA07G411300 TkA08G109250 TkA02G455650 TkA05G407520 TkA06G476300 TkA08G003540 TkA03G384240 TkA03G385860 TkA03G430400
DOF5.7 / MA0984.2 / Dof: 16 个候选 TF 基因; 1 个位点

参考 TF: DOF1.7;DOF5.3;DOF5.7;DOF5.8;DOF5.4;DOF3.7; 置信度: high

TkA08G158380 TkA01G480580 TkA08G220950 TkA06G097690 TkA03G169860 TkA06G156760 TkA07G411300 TkA08G109250 TkA02G455650 TkA05G407520 TkA06G476300 TkA08G003540 TkA03G384240 TkA03G385860 TkA03G430400 TkA07G314540
DOF5.3 / MA1071.2 / Dof: 16 个候选 TF 基因; 1 个位点

参考 TF: DOF5.3;DOF5.7;DOF5.8;DOF1.3;DOF5.4; 置信度: high

TkA01G480580 TkA08G220950 TkA06G097690 TkA03G169860 TkA06G156760 TkA02G499520 TkA05G347990 TkA08G106170 TkA07G411300 TkA08G109250 TkA02G455650 TkA03G348550 TkA07G419940 TkA03G384240 TkA03G385860 TkA03G430400
DOF3.1 / MA2379.1 / Dof: 18 个候选 TF 基因; 1 个位点

参考 TF: DOF3.4;DOF3.2;DOF3.6;DOF3.5;DOF3.7;DOF2.1;DOF1.1; 置信度: high

TkA06G156760 TkA01G480580 TkA08G220950 TkA04G044830 TkA04G045600 TkA08G051130 TkA05G432650 TkA02G425120 TkA05G407520 TkA06G476300 TkA08G003540 TkA05G351190 TkA01G076090 TkA01G603240 TkA03G384240 TkA03G385860 TkA03G430400 TkA07G314540
转录因子 ID 统一基因 ID TF 家族 motif 编号 起始 终止 链方向 匹配序列 标准化分数 原始分数 共识序列 motif 来源 证据层级
PK20392.1 submitted_sequence shared_or_unassigned MA2082.1 8 13 - ATTATT 1.000 10.2 AATAAT JASPAR2024_CORE_plants_non-redundant submitted_sequence_motif_hit
TkA03G519950 TkA08G158380 TkA06G156760 TkA02G499520 TkA05G347990 TkA08G106170 +12 submitted_sequence Dof MA0981.2 18 21 + AAAG 1.000 6.587 AAAG JASPAR2024_CORE_plants_non-redundant submitted_sequence_motif_hit
TkA06G156760 TkA05G432650 TkA07G411300 TkA08G109250 TkA04G044830 TkA04G045600 +5 submitted_sequence Dof MA0982.2 18 21 + AAAG 1.000 6.397 AAAG JASPAR2024_CORE_plants_non-redundant submitted_sequence_motif_hit
TkA06G156760 TkA01G480580 TkA08G220950 TkA04G044830 TkA04G045600 TkA08G051130 +12 submitted_sequence Dof MA2379.1 18 21 - AAAG 1.000 6.022 CTTT JASPAR2024_CORE_plants_non-redundant submitted_sequence_motif_hit
TkA01G480580 TkA08G220950 TkA06G097690 TkA03G169860 TkA06G156760 TkA02G499520 +10 submitted_sequence Dof MA1071.2 18 21 + AAAG 1.000 6.42 AAAG JASPAR2024_CORE_plants_non-redundant submitted_sequence_motif_hit
TkA01G480580 TkA08G220950 TkA06G097690 TkA03G169860 TkA04G044830 TkA04G045600 +12 submitted_sequence Dof MA0983.2 18 21 + AAAG 1.000 6.936 AAAG JASPAR2024_CORE_plants_non-redundant submitted_sequence_motif_hit
TkA08G158380 TkA01G480580 TkA08G220950 TkA06G097690 TkA03G169860 TkA06G156760 +10 submitted_sequence Dof MA0984.2 18 22 + AAAGA 1.000 7.445 AAAGA JASPAR2024_CORE_plants_non-redundant submitted_sequence_motif_hit
PHYPADRAFT_140773 submitted_sequence shared_or_unassigned MA0987.2 18 21 + AAAG 1.000 6.923 AAAG JASPAR2024_CORE_plants_non-redundant submitted_sequence_motif_hit
PHYPADRAFT_38837 submitted_sequence shared_or_unassigned MA1022.2 18 21 + AAAG 1.000 6.646 AAAG JASPAR2024_CORE_plants_non-redundant submitted_sequence_motif_hit
PK01144.1 submitted_sequence shared_or_unassigned MA2056.1 18 21 - AAAG 1.000 7.388 CTTT JASPAR2024_CORE_plants_non-redundant submitted_sequence_motif_hit
PK07031.1 submitted_sequence shared_or_unassigned MA2062.1 18 21 - AAAG 1.000 6.74 CTTT JASPAR2024_CORE_plants_non-redundant submitted_sequence_motif_hit
PK15337.1 submitted_sequence shared_or_unassigned MA2070.1 18 21 - AAAG 1.000 6.865 CTTT JASPAR2024_CORE_plants_non-redundant submitted_sequence_motif_hit
PK16340.1 submitted_sequence shared_or_unassigned MA2073.1 18 21 - AAAG 1.000 6.621 CTTT JASPAR2024_CORE_plants_non-redundant submitted_sequence_motif_hit
PpDof6 submitted_sequence Dof MA2394.1 18 21 - AAAG 1.000 6.655 CTTT JASPAR2024_CORE_plants_non-redundant submitted_sequence_motif_hit
e_gw1.170.52.1 submitted_sequence shared_or_unassigned MA2381.1 18 21 - AAAG 1.000 6.935 CTTT JASPAR2024_CORE_plants_non-redundant submitted_sequence_motif_hit
AT1G72740 submitted_sequence shared_or_unassigned MA1353.2 28 38 + ATTTAGGGTTT 1.000 18.79 ATTTAGGGTTT JASPAR2024_CORE_plants_non-redundant submitted_sequence_motif_hit
TRB1 submitted_sequence shared_or_unassigned MA2032.2 30 38 - TTAGGGTTT 1.000 15.89 AAACCCTAA JASPAR2024_CORE_plants_non-redundant submitted_sequence_motif_hit
OsTRBF3 submitted_sequence shared_or_unassigned MA2404.1 31 37 - TAGGGTT 1.000 10.56 AACCCTA JASPAR2024_CORE_plants_non-redundant submitted_sequence_motif_hit
P0510F09.23 submitted_sequence shared_or_unassigned MA1030.2 31 37 - TAGGGTT 1.000 10.55 AACCCTA JASPAR2024_CORE_plants_non-redundant submitted_sequence_motif_hit
TRB2 submitted_sequence shared_or_unassigned MA1355.2 28 38 - ATTTAGGGTTT 0.995 17.05 AAACCCTAATT JASPAR2024_CORE_plants_non-redundant submitted_sequence_motif_hit