橡胶草转录因子结合位点预测
基于橡胶草转录因子 binding motif，对提交 DNA 序列或基因上游 4000 bp 预测可能的转录因子结合位点。预测结果属于 motif 支持的计算候选证据，不等同于已实验证实的真实调控关系。
1174motifs
45224上游序列
4000 bp预测生成长度
候选结合位点
完整候选位点总数：2831
DOF1.8 / MA0981.2 / Dof: 18 个候选 TF 基因; 1 个位点
参考 TF: DOF1.5;DOF1.7;DOF5.8;DOF1.3;DOF1.1;DOF1; 置信度: high
DOF2.4 / MA0982.2 / Dof: 11 个候选 TF 基因; 1 个位点
参考 TF: DOF3.4;DOF2.2;DOF5.4;DOF2.1;DOF4.4; 置信度: high
DOF5.6 / MA0983.2 / Dof: 18 个候选 TF 基因; 1 个位点
参考 TF: DOF5.3;DOF5.7;DOF3.6;DOF5.8;DOF5.4;DOF4.6; 置信度: high
DOF5.3 / MA1071.2 / Dof: 16 个候选 TF 基因; 1 个位点
参考 TF: DOF5.3;DOF5.7;DOF5.8;DOF1.3;DOF5.4; 置信度: high
DOF3.1 / MA2379.1 / Dof: 18 个候选 TF 基因; 1 个位点
参考 TF: DOF3.4;DOF3.2;DOF3.6;DOF3.5;DOF3.7;DOF2.1;DOF1.1; 置信度: high
| 转录因子 ID | 统一基因 ID | TF 家族 | motif 编号 | 起始 | 终止 | 链方向 | 匹配序列 | 标准化分数 | 原始分数 | 共识序列 | motif 来源 | 证据层级 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
PHYPADRAFT_153324
|
TkA01G000070 |
shared_or_unassigned | MA0989.2 |
3 | 7 | + | AAAAG |
1.000 | 7.885 | AAAAG |
JASPAR2024_CORE_plants_non-redundant | TK1151_4000bp_promoter_motif_hit |
PK03929.1
|
TkA01G000070 |
shared_or_unassigned | MA2058.1 |
3 | 7 | - | AAAAG |
1.000 | 8.315 | CTTTT |
JASPAR2024_CORE_plants_non-redundant | TK1151_4000bp_promoter_motif_hit |
PK10955.1
|
TkA01G000070 |
shared_or_unassigned | MA2069.1 |
3 | 7 | - | AAAAG |
1.000 | 8.996 | CTTTT |
JASPAR2024_CORE_plants_non-redundant | TK1151_4000bp_promoter_motif_hit |
PK20317.1
|
TkA01G000070 |
shared_or_unassigned | MA2081.1 |
3 | 7 | - | AAAAG |
1.000 | 7.778 | CTTTT |
JASPAR2024_CORE_plants_non-redundant | TK1151_4000bp_promoter_motif_hit |
PK20555.1
|
TkA01G000070 |
shared_or_unassigned | MA2356.1 |
3 | 7 | - | AAAAG |
1.000 | 7.584 | CTTTT |
JASPAR2024_CORE_plants_non-redundant | TK1151_4000bp_promoter_motif_hit |
PK23009.1
|
TkA01G000070 |
shared_or_unassigned | MA2084.1 |
3 | 7 | - | AAAAG |
1.000 | 8.496 | CTTTT |
JASPAR2024_CORE_plants_non-redundant | TK1151_4000bp_promoter_motif_hit |
PK23763.1
|
TkA01G000070 |
shared_or_unassigned | MA2085.1 |
3 | 7 | - | AAAAG |
1.000 | 8.456 | CTTTT |
JASPAR2024_CORE_plants_non-redundant | TK1151_4000bp_promoter_motif_hit |
e_gw1.392.16.1
|
TkA01G000070 |
shared_or_unassigned | MA2383.1 |
3 | 7 | - | AAAAG |
1.000 | 7.901 | CTTTT |
JASPAR2024_CORE_plants_non-redundant | TK1151_4000bp_promoter_motif_hit |
TkA03G519950
TkA08G158380
TkA06G156760
TkA02G499520
TkA05G347990
TkA08G106170
+12
|
TkA01G000070 |
Dof | MA0981.2 |
4 | 7 | + | AAAG |
1.000 | 6.587 | AAAG |
JASPAR2024_CORE_plants_non-redundant | TK1151_4000bp_promoter_motif_hit |
TkA06G156760
TkA05G432650
TkA07G411300
TkA08G109250
TkA04G044830
TkA04G045600
+5
|
TkA01G000070 |
Dof | MA0982.2 |
4 | 7 | + | AAAG |
1.000 | 6.397 | AAAG |
JASPAR2024_CORE_plants_non-redundant | TK1151_4000bp_promoter_motif_hit |
TkA06G156760
TkA01G480580
TkA08G220950
TkA04G044830
TkA04G045600
TkA08G051130
+12
|
TkA01G000070 |
Dof | MA2379.1 |
4 | 7 | - | AAAG |
1.000 | 6.022 | CTTT |
JASPAR2024_CORE_plants_non-redundant | TK1151_4000bp_promoter_motif_hit |
TkA01G480580
TkA08G220950
TkA06G097690
TkA03G169860
TkA06G156760
TkA02G499520
+10
|
TkA01G000070 |
Dof | MA1071.2 |
4 | 7 | + | AAAG |
1.000 | 6.42 | AAAG |
JASPAR2024_CORE_plants_non-redundant | TK1151_4000bp_promoter_motif_hit |
TkA01G480580
TkA08G220950
TkA06G097690
TkA03G169860
TkA04G044830
TkA04G045600
+12
|
TkA01G000070 |
Dof | MA0983.2 |
4 | 7 | + | AAAG |
1.000 | 6.936 | AAAG |
JASPAR2024_CORE_plants_non-redundant | TK1151_4000bp_promoter_motif_hit |
PHYPADRAFT_140773
|
TkA01G000070 |
shared_or_unassigned | MA0987.2 |
4 | 7 | + | AAAG |
1.000 | 6.923 | AAAG |
JASPAR2024_CORE_plants_non-redundant | TK1151_4000bp_promoter_motif_hit |
PHYPADRAFT_38837
|
TkA01G000070 |
shared_or_unassigned | MA1022.2 |
4 | 7 | + | AAAG |
1.000 | 6.646 | AAAG |
JASPAR2024_CORE_plants_non-redundant | TK1151_4000bp_promoter_motif_hit |
PK01144.1
|
TkA01G000070 |
shared_or_unassigned | MA2056.1 |
4 | 7 | - | AAAG |
1.000 | 7.388 | CTTT |
JASPAR2024_CORE_plants_non-redundant | TK1151_4000bp_promoter_motif_hit |
PK07031.1
|
TkA01G000070 |
shared_or_unassigned | MA2062.1 |
4 | 7 | - | AAAG |
1.000 | 6.74 | CTTT |
JASPAR2024_CORE_plants_non-redundant | TK1151_4000bp_promoter_motif_hit |
PK15337.1
|
TkA01G000070 |
shared_or_unassigned | MA2070.1 |
4 | 7 | - | AAAG |
1.000 | 6.865 | CTTT |
JASPAR2024_CORE_plants_non-redundant | TK1151_4000bp_promoter_motif_hit |
PK16340.1
|
TkA01G000070 |
shared_or_unassigned | MA2073.1 |
4 | 7 | - | AAAG |
1.000 | 6.621 | CTTT |
JASPAR2024_CORE_plants_non-redundant | TK1151_4000bp_promoter_motif_hit |
PpDof6
|
TkA01G000070 |
Dof | MA2394.1 |
4 | 7 | - | AAAG |
1.000 | 6.655 | CTTT |
JASPAR2024_CORE_plants_non-redundant | TK1151_4000bp_promoter_motif_hit |