Orthology / Synteny Evidence

Inspect cross-reference orthology and synteny-block evidence.

TkA01G624900 LXL04_000258 JCVI_TKOH_00001 Gene ID Converter

Evidence boundary: TK1151 and OH-1004 are different materials of the same species. This page shows ortholog and synteny ID correspondence between two reference genomes, not a same-cultivar genome-version upgrade. Blocks are based on DIAMOND RBH plus coordinate-order anchors and can be further refined by MCScanX/JCVI. JCVI_TKOH_ block IDs are also accepted.

Global Block Summary

Synteny blocks

427

ID converter records

84884

High confidence

302

Medium confidence

125

Material	Assembly	Genes	Gap runs	Telomere scan
TK1151	`TK1151_GWHBCHF00000000`	45224	1917	0/9
OH-1004	`OH1004_GCA_047496595.1`	40057	131	0/711

Query Interpretation

Input ID

JCVI_TKOH_00272

Query type

Block ID

Crosswalk plus synteny evidence

Resolved gene

None

No rubber dandelion gene was resolved

Linked evidence

0 / 1 / 428

crosswalk / blocks / anchors

Best block: JCVI_TKOH_00272

The query resolves to a synteny-block ID. Block span and anchor genes are shown first.

Gene ID Converter Download current result

Linear Synteny View

The best synteny block for the current query is shown as a linear ribbon.

JCVI_TKOH_00272 Chr06 21699631-41102326 Chr05 87809389-105841807 mixed High 28 anchors

High Medium Other Only the first 12 anchors are drawn

The anchor table is paginated; TSV contains all anchors for the current query. The ribbon shows only a partial linear backbone of the current block.

Current Query Evidence

No ID correspondence record is available for the current query.

Synteny Evidence

Block	Query location	Target location	Orientation	Current mapped anchors	Confidence	Note
`JCVI_TKOH_00272`	Chr06:21699631-41102326	Chr05:87809389-105841807	mixed	428	High	Formal JCVI synteny block from rebuilt ID map pipeline.

Block Anchor Genes

Total anchors: 428 · Showing 401–428 · Page 3/3

Previous Download All Anchors TSV

TkA06G147660 → LXL04_024398

99.3%

TkA06G148070 → LXL04_024395

100.0%

TkA06G148080 → LXL04_024395

100.0%

TkA06G148090 → LXL04_024394

99.4%

TkA06G149770 → LXL04_024386

91.0%

TkA06G149780 → LXL04_024385

91.1%

TkA06G150190 → LXL04_024383

98.9%

TkA06G150200 → LXL04_024382

94.6%

TkA06G150480 → LXL04_024377

99.7%

TkA06G150490 → LXL04_024376

98.7%

TkA06G150780 → LXL04_024374

95.8%

TkA06G151990 → LXL04_024371

100.0%

TK1151 gene	OH-1004 gene	Block	Identity	Coverage	Confidence
`TkA06G147660`	`LXL04_024398`	`JCVI_TKOH_00272`	99.3	100.0 / 100.0	Strict
`TkA06G148070`	`LXL04_024395`	`JCVI_TKOH_00272`	100.0	64.322 / 28.132	Complex
`TkA06G148080`	`LXL04_024395`	`JCVI_TKOH_00272`	100.0	86.957 / 21.978	Review
`TkA06G148090`	`LXL04_024394`	`JCVI_TKOH_00272`	99.4	79.821 / 97.79	Complex
`TkA06G149770`	`LXL04_024386`	`JCVI_TKOH_00272`	91.0	100.0 / 100.0	Probable
`TkA06G149780`	`LXL04_024385`	`JCVI_TKOH_00272`	91.1	100.0 / 82.807	Probable
`TkA06G150190`	`LXL04_024383`	`JCVI_TKOH_00272`	98.9	100.0 / 100.0	Strict
`TkA06G150200`	`LXL04_024382`	`JCVI_TKOH_00272`	94.6	100.0 / 100.0	Probable
`TkA06G150480`	`LXL04_024377`	`JCVI_TKOH_00272`	99.7	100.0 / 100.0	Strict
`TkA06G150490`	`LXL04_024376`	`JCVI_TKOH_00272`	98.7	100.0 / 100.0	Complex
`TkA06G150780`	`LXL04_024374`	`JCVI_TKOH_00272`	95.8	99.702 / 89.589	Complex
`TkA06G151990`	`LXL04_024371`	`JCVI_TKOH_00272`	100.0	46.753 / 39.344	Review
`TkA06G152040`	`LXL04_024368`	`JCVI_TKOH_00272`	99.5	94.802 / 100.0	Complex
`TkA06G152050`	`LXL04_024367`	`JCVI_TKOH_00272`	89.3	94.034 / 68.199	Review
`TkA06G152060`	`LXL04_024366`	`JCVI_TKOH_00272`	98.6	100.0 / 100.0	Strict
`TkA06G152130`	`LXL04_024365`	`JCVI_TKOH_00272`	98.4	100.0 / 100.0	Complex
`TkA06G152490`	`LXL04_024364`	`JCVI_TKOH_00272`	68.5	85.606 / 95.858	Complex
`TkA06G152640`	`LXL04_024362`	`JCVI_TKOH_00272`	99.8	99.512 / 100.0	Strict
`TkA06G152660`	`LXL04_024360`	`JCVI_TKOH_00272`	91.7	100.0 / 100.0	Probable
`TkA06G152850`	`LXL04_024358`	`JCVI_TKOH_00272`	100.0	100.0 / 100.0	Complex
`TkA06G152860`	`LXL04_024357`	`JCVI_TKOH_00272`	87.5	100.0 / 100.0	Review
`TkA06G152870`	`LXL04_024356`	`JCVI_TKOH_00272`	89.3	100.0 / 77.059	Complex
`TkA06G153070`	`LXL04_024355`	`JCVI_TKOH_00272`	99.2	100.0 / 100.0	Strict
`TkA06G154050`	`LXL04_024350`	`JCVI_TKOH_00272`	98.6	100.0 / 97.576	Complex
`TkA06G154300`	`LXL04_024346`	`JCVI_TKOH_00272`	99.2	100.0 / 97.244	Review
`TkA06G154580`	`LXL04_024345`	`JCVI_TKOH_00272`	100.0	100.0 / 100.0	Strict
`TkA06G154590`	`LXL04_024344`	`JCVI_TKOH_00272`	99.3	100.0 / 100.0	Strict
`TkA06G154900`	`LXL04_024342`	`JCVI_TKOH_00272`	59.7	72.642 / 22.917	Complex