Orthology / Synteny Evidence
Inspect cross-reference orthology and synteny-block evidence.
Evidence boundary: TK1151 and OH-1004 are different materials of the same species. This page shows ortholog and synteny ID correspondence between two reference genomes, not a same-cultivar genome-version upgrade. Blocks are based on DIAMOND RBH plus coordinate-order anchors and can be further refined by MCScanX/JCVI. JCVI_TKOH_ block IDs are also accepted.
Global Block Summary
Synteny blocks
427
ID converter records
84884
High confidence
302
Medium confidence
125
| Material | Assembly | Genes | Gap runs | Telomere scan |
|---|---|---|---|---|
| TK1151 | TK1151_GWHBCHF00000000 |
45224 | 1917 | 0/9 |
| OH-1004 | OH1004_GCA_047496595.1 |
40057 | 131 | 0/711 |
Query Interpretation
Input ID
JCVI_TKOH_00288
Query type
Block ID
Crosswalk plus synteny evidence
Resolved gene
None
No rubber dandelion gene was resolved
Linked evidence
0 / 1 / 16
crosswalk / blocks / anchors
Best block:
JCVI_TKOH_00288The query resolves to a synteny-block ID. Block span and anchor genes are shown first.
Linear Synteny View
The best synteny block for the current query is shown as a linear ribbon.
High
Medium
Other
Only the first 12 anchors are drawn
The anchor table is paginated; TSV contains all anchors for the current query. The ribbon shows only a partial linear backbone of the current block.
Current Query Evidence
No ID correspondence record is available for the current query.
Synteny Evidence
| Block | Query location | Target location | Orientation | Current mapped anchors | Confidence | Note |
|---|---|---|---|---|---|---|
JCVI_TKOH_00288 |
Chr06:118328041-119062341 | Chr05:118515-757855 | mixed | 16 | High | Formal JCVI synteny block from rebuilt ID map pipeline. |
Block Anchor Genes
Total anchors: 16 · Showing 1–16 · Page 1/1
| TK1151 gene | OH-1004 gene | Block | Identity | Coverage | Confidence |
|---|---|---|---|---|---|
TkA06G477650 | LXL04_022537 | JCVI_TKOH_00288 | 88.4 | 57.255 / 95.639 | Complex |
TkA06G477730 | LXL04_022535 | JCVI_TKOH_00288 | 78.8 | 51.212 / 27.875 | Review |
TkA06G479290 | LXL04_022531 | JCVI_TKOH_00288 | 100.0 | 90.8 / 46.708 | Review |
TkA06G479560 | LXL04_022530 | JCVI_TKOH_00288 | 100.0 | 100.0 / 100.0 | Strict |
TkA06G479570 | LXL04_022529 | JCVI_TKOH_00288 | 97.6 | 100.0 / 33.017 | Review |
TkA06G479590 | LXL04_022529 | JCVI_TKOH_00288 | 99.8 | 100.0 / 51.465 | Review |
TkA06G479600 | LXL04_022528 | JCVI_TKOH_00288 | 97.1 | 100.0 / 93.498 | Review |
TkA06G479610 | LXL04_022527 | JCVI_TKOH_00288 | 93.6 | 79.915 / 26.342 | Complex |
TkA06G479620 | LXL04_022527 | JCVI_TKOH_00288 | 86.0 | 75.354 / 21.681 | Complex |
TkA06G479680 | LXL04_022526 | JCVI_TKOH_00288 | 95.7 | 96.667 / 10.061 | Review |
TkA06G479920 | LXL04_022524 | JCVI_TKOH_00288 | 58.8 | 75.837 / 53.311 | Complex |
TkA06G480070 | LXL04_022526 | JCVI_TKOH_00288 | 99.3 | 100.0 / 11.709 | Review |
TkA06G480080 | LXL04_022526 | JCVI_TKOH_00288 | 93.7 | 100.0 / 27.493 | Complex |
TkA06G480110 | LXL04_022524 | JCVI_TKOH_00288 | 99.7 | 94.906 / 39.073 | Review |
TkA06G480260 | LXL04_022526 | JCVI_TKOH_00288 | 90.0 | 27.094 / 9.54 | Complex |
TkA06G480290 | LXL04_022527 | JCVI_TKOH_00288 | 48.1 | 85.324 / 23.446 | Complex |