Orthology / Synteny Evidence
Inspect cross-reference orthology and synteny-block evidence.
Evidence boundary: TK1151 and OH-1004 are different materials of the same species. This page shows ortholog and synteny ID correspondence between two reference genomes, not a same-cultivar genome-version upgrade. Blocks are based on DIAMOND RBH plus coordinate-order anchors and can be further refined by MCScanX/JCVI. JCVI_TKOH_ block IDs are also accepted.
Global Block Summary
Synteny blocks
427
ID converter records
84884
High confidence
302
Medium confidence
125
| Material | Assembly | Genes | Gap runs | Telomere scan |
|---|---|---|---|---|
| TK1151 | TK1151_GWHBCHF00000000 |
45224 | 1917 | 0/9 |
| OH-1004 | OH1004_GCA_047496595.1 |
40057 | 131 | 0/711 |
Query Interpretation
Input ID
JCVI_TKOH_00116
Query type
Block ID
Crosswalk plus synteny evidence
Resolved gene
None
No rubber dandelion gene was resolved
Linked evidence
0 / 1 / 11
crosswalk / blocks / anchors
Best block:
JCVI_TKOH_00116The query resolves to a synteny-block ID. Block span and anchor genes are shown first.
Linear Synteny View
The best synteny block for the current query is shown as a linear ribbon.
High
Medium
Other
Only the first 12 anchors are drawn
The anchor table is paginated; TSV contains all anchors for the current query. The ribbon shows only a partial linear backbone of the current block.
Current Query Evidence
No ID correspondence record is available for the current query.
Synteny Evidence
| Block | Query location | Target location | Orientation | Current mapped anchors | Confidence | Note |
|---|---|---|---|---|---|---|
JCVI_TKOH_00116 |
Chr03:94034141-94397034 | Chr01:153420770-153958275 | + | 11 | High | Formal JCVI synteny block from rebuilt ID map pipeline. |
Block Anchor Genes
Total anchors: 11 · Showing 1–11 · Page 1/1
| TK1151 gene | OH-1004 gene | Block | Identity | Coverage | Confidence |
|---|---|---|---|---|---|
TkA03G381610 | LXL04_005049 | JCVI_TKOH_00116 | 94.1 | 96.935 / 51.134 | Complex |
TkA03G381730 | LXL04_005043 | JCVI_TKOH_00116 | 88.6 | 33.504 / 78.107 | Complex |
TkA03G381990 | LXL04_005051 | JCVI_TKOH_00116 | 100.0 | 100.0 / 56.981 | Review |
TkA03G382000 | LXL04_005052 | JCVI_TKOH_00116 | 97.9 | 100.0 / 100.0 | Complex |
TkA03G382010 | LXL04_005053 | JCVI_TKOH_00116 | 95.7 | 100.0 / 48.148 | Review |
TkA03G382020 | LXL04_005054 | JCVI_TKOH_00116 | 94.9 | 100.0 / 75.368 | Complex |
TkA03G382290 | LXL04_005051 | JCVI_TKOH_00116 | 100.0 | 100.0 / 56.981 | Review |
TkA03G382300 | LXL04_005052 | JCVI_TKOH_00116 | 97.9 | 100.0 / 100.0 | Complex |
TkA03G382310 | LXL04_005053 | JCVI_TKOH_00116 | 95.7 | 100.0 / 48.148 | Review |
TkA03G382320 | LXL04_005054 | JCVI_TKOH_00116 | 94.9 | 100.0 / 75.368 | Complex |
TkA03G382460 | LXL04_005060 | JCVI_TKOH_00116 | 83.9 | 100.0 / 80.149 | Complex |