TkAUNG087820 | RubberDandelionOmics

Gene overview

TkAUNG087820

Reference: TK1151 Chr: ChrUn Coordinates: 24944521-24946227 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1498 bp · TkAUNG087820|TK1151|cDNA

CAGCCGCATCCAAAACAGTAACCACCGTAAATAAAAGCTGAAATATAGTACAAAATAAAAACATGATCCACCTCGAACACCCATCCCCTTTCTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCAAAACTCGAATCTTTCTAGATTGAGAGGGTCTTCTGATCCAACATCAGCGACAACTACTGATTTCCATGTAAATTCCCTCAATTGGGTTTTTGATTTGAGACAGAATTTGCCAAGTATTAGTAGAA...

CDS

Download CDS FASTA

870 bp · TkAUNG087820|TK1151|CDS

ATGAGGGAGGACGAGTCCAATTGGTTTTCAAAGTGGGAAGAAGAACTGCCGTCGCCGGACGACCTTATGCCCTTGTCGCAAACCCTAATCACTCCTGATCTAGCAATCGCTTTTGATATCCGAAGCCCACATAACCACCATACACCTTCACTTCAGCACCACCAACAACCGCCGCCGATTTCAACCCCTTCTTCTCAACCCAATTCTGGGGAATTTGATTCCCCTGAACTCGGCGGTGGTGGATCCGGCGATGAACCAGC...

Protein

Download Protein FASTA

289 aa · TkAUNG087820|TK1151|PROTEIN

MREDESNWFSKWEEELPSPDDLMPLSQTLITPDLAIAFDIRSPHNHHTPSLQHHQQPPPISTPSSQPNSGEFDSPELGGGGSGDEPARTLKRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRMQGLSSGSGNGSGGDPATDHLFASSPVPAHFLHQGRPNSDHYLPYVPVAALQQQHHHQHIAAAVAGHHPQMQPRYGQIGHFGSPRNGQFEHPFLSRQSHQQQLIHRVGTPI...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkAUNG087820`
TK1151 ID	TkAUNG087820
OH-1004 ID	LXL04_000206
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	98.600
Protein coverage (%)	TK1151 95.848 / OH-1004 95.517 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkAUNG087820

Location ChrUn:24944521-24946227 (-)

Description Similar to MYBC1: Transcription factor MYBC1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g40970`	Probable transcription factor that acts as a negative regulator of freezing tolerance via a CBF-independent pathway.	A single-repeat R3-MYB transcription factor MYBC1 negatively regulates freezing tolerance in Arabidopsis.2010 · DOI: 10.1016/j.bbrc.2010.03.114
`At5g59570`	Transcription factor that is a critical component of the regulatory circuit of the circadian clock.	No verified direct reference in this release
`At3g46640`	Transcription factor that is essential for the generation of the circadian clock oscillation.	PHYTOCLOCK 1 encoding a novel GARP protein essential for the Arabidopsis circadian clock.2005 · DOI: 10.1111/j.1365-2443.2005.00892.x LUX ARRHYTHMO encodes a nighttime repressor of circadian gene expression in the Arabidopsis core clock.2011 · DOI: 10.1016/j.cub.2010.12.021
`At3g16857`	Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'.	Two-component circuitry in Arabidopsis cytokinin signal transduction.2001 · DOI: 10.1038/35096500 ARR1, a transcription factor for genes immediately responsive to cytokinins.2001 · DOI: 10.1126/science.1065201 A genetic framework for the control of cell division and differentiation in the root meristem.2008 · DOI: 10.1126/science.1164147

Rice

Reference gene ID	Possible function	Papers / DOI
`Os01g0971800`	Transcription factor that is essential for the generation of the circadian clock oscillation.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_000206 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0000122 negative regulation of transcription by RNA polymerase II Biological Process

GO:0006351 DNA-templated transcription Biological Process

GO:0006355 regulation of DNA-templated transcription Biological Process

GO:0007623 circadian rhythm Biological Process

GO:0009409 response to cold Biological Process

GO:0009414 response to water deprivation Biological Process

GO:0009735 response to cytokinin Biological Process

GO:0009736 cytokinin-activated signaling pathway Biological Process

GO:0009909 regulation of flower development Biological Process

GO:0010082 regulation of root meristem growth Biological Process

GO:0010380 regulation of chlorophyll biosynthetic process Biological Process

GO:0010468 regulation of gene expression Biological Process

KEGG gene cross-reference

ath:AT2G40970

ath:AT3G16857

ath:AT3G46640

ath:AT5G59570

dosa:Os01g0971800

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.982

Rank 1 · TkAUNG087820 · TK1151

Cytoplasm0.082

Rank 2 · TkAUNG087820 · TK1151

Cell membrane0.020

Rank 3 · TkAUNG087820 · TK1151

Endoplasmic reticulum0.013

Rank 4 · TkAUNG087820 · TK1151

Plastid0.008

Rank 5 · TkAUNG087820 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00249Myb_DNA-binding95-144 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkAUNG087820	`PF00249`	Myb_DNA-binding	95	144	6.1e-09	36.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`O22210`	Arabidopsis thaliana	sp\|O22210\|MYBC1_ARATH Transcription factor MYBC1	66.200%	Swiss-Prot	Medium
`Q9LTH4`	Arabidopsis thaliana	sp\|Q9LTH4\|PCLL_ARATH Transcription factor BOA	47.600%	Swiss-Prot	Medium
`Q9SNB4`	Arabidopsis thaliana	sp\|Q9SNB4\|PCL1_ARATH Transcription factor LUX	49.500%	Swiss-Prot	Medium
`Q940D0`	Arabidopsis thaliana	sp\|Q940D0\|ARR1_ARATH Two-component response regulator ARR1	37.900%	Swiss-Prot	Medium
`Q94DH3`	Oryza sativa subsp. japonica	sp\|Q94DH3\|PCL1_ORYSJ Transcription factor PCL1	68.300%	Swiss-Prot	Low

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