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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkAUNG044070
Reference: TK1151 Chr: ChrUn Coordinates: 12238890-12240536 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1647 bp · TkAUNG044070|TK1151|cDNA

ATGTCGATGCACCGTCTTATGCTAAAGTGGTGCCAGGTTCGGGTTCCTCGAGCATCTTGGGGAGTCTTCCACAGCCATGTGCTCCTACGATCACCAAAAACCATTTCCCCTACGTCTTTTTGGCAAATATCCACTCTTTCGACCACCAATCTCATTCAAGATTACATTCGCGATGGTAACGTTAACGATGCTCGCAAATTGTTTGATGAAAATCTCACGTCTTGTAATACCATCGCTTGGAATTCCATGATCACTGGCCA...

CDS

Download CDS FASTA

1647 bp · TkAUNG044070|TK1151|CDS

ATGTCGATGCACCGTCTTATGCTAAAGTGGTGCCAGGTTCGGGTTCCTCGAGCATCTTGGGGAGTCTTCCACAGCCATGTGCTCCTACGATCACCAAAAACCATTTCCCCTACGTCTTTTTGGCAAATATCCACTCTTTCGACCACCAATCTCATTCAAGATTACATTCGCGATGGTAACGTTAACGATGCTCGCAAATTGTTTGATGAAAATCTCACGTCTTGTAATACCATCGCTTGGAATTCCATGATCACTGGCCA...

Protein

Download Protein FASTA

548 aa · TkAUNG044070|TK1151|PROTEIN

MSMHRLMLKWCQVRVPRASWGVFHSHVLLRSPKTISPTSFWQISTLSTTNLIQDYIRDGNVNDARKLFDENLTSCNTIAWNSMITGHIRHNQMQSAHDLFDRMPVRDVVSWNTMLSGLNKTKNPHKLHQLFLQMNRAGERPNQFTFPTIISGFLNTFDVLVPQLHSLILHLGLHSNIFVGSALMRGYTHLHDHYSLCHVFDDILLKDISTWNALLVGYMDLGFTTEAQMTFNRMPEVNIISWTTLVDGYIKNKKINQARH...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkAUNG044070
TK1151 IDTkAUNG044070
OH-1004 IDLXL04_001273
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)99.400
Protein coverage (%)TK1151 94.891 / OH-1004 99.426
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkAUNG044070
LocationChrUn:12238890-12240536 (+)
DescriptionSimilar to PCMP-H24: Pentatricopeptide repeat-containing protein At4g02750
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At2g03880 Pentatricopeptide repeat-containing protein At2g03880, mitochondrial. No verified direct reference in this release
At5g13230 Putative pentatricopeptide repeat-containing protein At5g13230, mitochondrial. No verified direct reference in this release
At3g23330 Putative pentatricopeptide repeat-containing protein At3g23330. No verified direct reference in this release
At4g33990 Pentatricopeptide repeat-containing protein At4g33990. No verified direct reference in this release
At3g02330 Involved in C-to-U editing of mitochondrial RNA.
MEF13 Requires MORF3 and MORF8 for RNA Editing at Eight Targets in Mitochondrial mRNAs in Arabidopsis thaliana.2015 · DOI: 10.1016/j.molp.2015.05.008

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_001273 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0009451 RNA modification Biological Process
GO:0010182 sugar mediated signaling pathway Biological Process
GO:0010214 seed coat development Biological Process
GO:0080156 mitochondrial mRNA modification Biological Process
GO:0140547 acquisition of seed longevity Biological Process
GO:0005739 mitochondrion Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0003723 RNA binding Molecular Function
GO:0008270 zinc ion binding Molecular Function
KEGG gene cross-reference
ath:AT2G13600
ath:AT4G02750
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.755
Rank 1 · TkAUNG044070 · TK1151
Plastid0.109
Rank 2 · TkAUNG044070 · TK1151
Nucleus0.045
Rank 3 · TkAUNG044070 · TK1151
Cytoplasm0.030
Rank 4 · TkAUNG044070 · TK1151
Cell membrane0.006
Rank 5 · TkAUNG044070 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF22330Rib_mS39_PPR37-71 aa
PF17049AEP142-82 aa
PF13041PPR_247-70 aa
PF05843Suf47-123 aa
PF24603TPR_3047-105 aa
PF29070MSC6_N48-155 aa
PF01535PPR49-70 aa
PF13812PPR_349-70 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkAUNG044070PF22330Rib_mS39_PPR37717.6e-0626.5
TkAUNG044070PF17049AEP142820.08112.7
TkAUNG044070PF13041PPR_247702e-75249.4
TkAUNG044070PF05843Suf471233.5e-0626.6
TkAUNG044070PF24603TPR_30471050.000123.3
TkAUNG044070PF29070MSC6_N481551.7e-1247.9
TkAUNG044070PF01535PPR49706.5e-67217.9
TkAUNG044070PF13812PPR_349702.6e-29101.8
TkAUNG044070PF23220HAT_Syf1_M49830.0001422.6
TkAUNG044070PF23240HAT_PRP39_N491020.01416.2
TkAUNG044070PF24760TPR_IF140_C51700.002219.1
TkAUNG044070PF14559TPR_1955690.0116.9
TkAUNG044070PF12854PPR_157708.6e-43144.5
TkAUNG044070PF23276TPR_24611021.4e-1041.9
TkAUNG044070PF22330Rib_mS39_PPR62927.6e-0626.5
TkAUNG044070PF01335DED701280.007617.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9SI53Arabidopsis thalianasp|Q9SI53|PP147_ARATH Pentatricopeptide repeat-containing protein At2g03880, mitochondrial29.200%Swiss-ProtLow
Q9LYV3Arabidopsis thalianasp|Q9LYV3|PP377_ARATH Putative pentatricopeptide repeat-containing protein At5g13230, mitochondrial28.800%Swiss-ProtLow
Q9LW63Arabidopsis thalianasp|Q9LW63|PP251_ARATH Putative pentatricopeptide repeat-containing protein At3g2333027.600%Swiss-ProtLow
O81767Arabidopsis thalianasp|O81767|PP348_ARATH Pentatricopeptide repeat-containing protein At4g3399028.400%Swiss-ProtLow
Q9FWA6Arabidopsis thalianasp|Q9FWA6|PP207_ARATH Pentatricopeptide repeat-containing protein At3g02330, mitochondrial27.300%Swiss-ProtLow

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