TkAUNG040040 | RubberDandelionOmics

Gene overview

TkAUNG040040

Reference: TK1151 Chr: ChrUn Coordinates: 11206372-11208477 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1266 bp · TkAUNG040040|TK1151|cDNA

GGAGAGTACAAAATTTGATCAGGTACAGTGTGGACCACCATGTGATCCATGCACCATCACCCCTATTAACTCCACCACCTCCATTTTCCCTCTTTTCCCTAAACCTAAAAATTTACTTCCCCAACTCCTTCATATTTTTACACACACACAGCAACCATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCGCTGTAAATTATAACTCCTATGGTGTAAAAAGCTACTTCCGCCATGGACGCACAGGATAAA...

CDS

Download CDS FASTA

825 bp · TkAUNG040040|TK1151|CDS

ATGGACGCACAGGATAAAAAAACGTGTACGGACGTTGATTATTATCACCAAGTATATGACGACGATGATTACTTTGGTGACATTCTCAATATCTTCGATTACCCTGTCGAGACTCTAGAAGGAGATACTCTTAACGAAGATTGGGCGGCAAAACTTGGTCCAATTCCGTCGGAGGTTTTCAAAGAGATGCCTCCGCCAGTCACCAATGTCAATAATGGTGGTGGCGGTGGTGATTGCTCTGTAGATTCCTTCCCGGAAAG...

Protein

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274 aa · TkAUNG040040|TK1151|PROTEIN

MDAQDKKTCTDVDYYHQVYDDDDYFGDILNIFDYPVETLEGDTLNEDWAAKLGPIPSEVFKEMPPPVTNVNNGGGGGDCSVDSFPESCVLNDTKREPIYYNSSFKSQQRSFEAPSPDSVLEHRTATSSTKPFPLQPEIPIPVKSRTKRSRSKSTLSTNPWSKSTLPISLQKDKKKKRILSQNHQVVNGVKKCSHCEITKTPQWREGPMGPKTLCNACGVRYRSGRLFPEYRPAASPSFVPDLHSNSHRKVIEMREKGGGM...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkAUNG040040`
TK1151 ID	TkAUNG040040
OH-1004 ID	LXL04_033053
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkAUNG040040

Location ChrUn:11206372-11208477 (-)

Description Similar to GATA11: GATA transcription factor 11

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g08010`	Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters.	No verified direct reference in this release
`At3g54810`	Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters.	No verified direct reference in this release
`At3g60530`	Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters.	No verified direct reference in this release
`At1g08000`	Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters.	No verified direct reference in this release
`At5g66320`	Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_033053 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006351 DNA-templated transcription Biological Process

GO:0006357 regulation of transcription by RNA polymerase II Biological Process

GO:0007623 circadian rhythm Biological Process

GO:0009416 response to light stimulus Biological Process

GO:0009845 seed germination Biological Process

GO:0030154 cell differentiation Biological Process

GO:0045893 positive regulation of DNA-templated transcription Biological Process

GO:0005634 nucleus Cellular Component

GO:0000976 transcription cis-regulatory region binding Molecular Function

GO:0003700 DNA-binding transcription factor activity Molecular Function

GO:0008270 zinc ion binding Molecular Function

KEGG gene cross-reference

ath:AT1G08000

ath:AT1G08010

ath:AT3G54810

ath:AT3G60530

ath:AT4G32890

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.965

Rank 1 · TkAUNG040040 · TK1151

Cytoplasm0.103

Rank 2 · TkAUNG040040 · TK1151

Cell membrane0.031

Rank 3 · TkAUNG040040 · TK1151

Endoplasmic reticulum0.023

Rank 4 · TkAUNG040040 · TK1151

Plastid0.013

Rank 5 · TkAUNG040040 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF27633DUF835948-123 aa

PF27633DUF8359147-184 aa

PF03868Ribosomal_L6e_N171-195 aa

PF00320GATA192-225 aa

PF27633DUF8359219-266 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkAUNG040040	`PF27633`	DUF8359	48	123	0.13	13.0
TkAUNG040040	`PF27633`	DUF8359	147	184	0.13	13.0
TkAUNG040040	`PF03868`	Ribosomal_L6e_N	171	195	0.068	14.1
TkAUNG040040	`PF00320`	GATA	192	225	4.7e-16	58.8
TkAUNG040040	`PF27633`	DUF8359	219	266	0.13	13.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q6DBP8`	Arabidopsis thaliana	sp\|Q6DBP8\|GAT11_ARATH GATA transcription factor 11	34.100%	Swiss-Prot	Medium
`Q9SV30`	Arabidopsis thaliana	sp\|Q9SV30\|GATA8_ARATH GATA transcription factor 8	82.400%	Swiss-Prot	Low
`O49743`	Arabidopsis thaliana	sp\|O49743\|GATA4_ARATH GATA transcription factor 4	59.200%	Swiss-Prot	Low
`Q8VZP4`	Arabidopsis thaliana	sp\|Q8VZP4\|GAT10_ARATH GATA transcription factor 10	73.500%	Swiss-Prot	Low
`Q9FH57`	Arabidopsis thaliana	sp\|Q9FH57\|GATA5_ARATH GATA transcription factor 5	68.400%	Swiss-Prot	Low

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