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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkAUNG022730
Reference: TK1151 Chr: ChrUn Coordinates: 6061329-6062941 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1193 bp · TkAUNG022730|TK1151|cDNA

GTCAATTTCAAATTTTGAACAGTATGAATGTTCTTTATGATGCAAAAGCGACCACACATGGAGAAGATAACTTTACCGCTCTTCTTCTATTTCTTCTTGTTCAAATCCATCTCCGGCGCCGATGACTGCCTCCCCGCCGCCTGCAGCCCCACCGGACCTCAGGTACGTTTCCCATTTCGTATCCGGGGTAAGCAACCATCCCACTGCGGATTCCCTGGTTTCGATCTCTCATGCAATAAACGAAATCGAACAATTCTACA...

CDS

Download CDS FASTA

1122 bp · TkAUNG022730|TK1151|CDS

ATGTTCTTTATGATGCAAAAGCGACCACACATGGAGAAGATAACTTTACCGCTCTTCTTCTATTTCTTCTTGTTCAAATCCATCTCCGGCGCCGATGACTGCCTCCCCGCCGCCTGCAGCCCCACCGGACCTCAGGTACGTTTCCCATTTCGTATCCGGGGTAAGCAACCATCCCACTGCGGATTCCCTGGTTTCGATCTCTCATGCAATAAACGAAATCGAACAATTCTACACCTTTCCTCCTCCCGATCATACATCGT...

Protein

Download Protein FASTA

373 aa · TkAUNG022730|TK1151|PROTEIN

MFFMMQKRPHMEKITLPLFFYFFLFKSISGADDCLPAACSPTGPQVRFPFRIRGKQPSHCGFPGFDLSCNKRNRTILHLSSSRSYIVNRISYGAQIIYIDPEFCRPKRIASFRLTGTPFDFSSVRGYKFYNCSVQKSNYMFPAETLPCLDSVNHSVIAVRTGLIPEGEPPENCQDIALISVPIRWYGSMKEELELMWFTPFCRPCEIEGRMCGLKNGDGETTCFGSPVGIQRNAKYALSIGTGVSILICIFGIVSYTAHK...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkAUNG022730
TK1151 IDTkAUNG022730
OH-1004 IDLXL04_026346
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)99.700
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkAUNG022730
LocationChrUn:6061329-6062941 (-)
DescriptionSimilar to ATL22: RING-H2 finger protein ATL22
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At2g25410 RING-H2 finger protein ATL22. No verified direct reference in this release
At2g46494 Putative RING-H2 finger protein ATL21B. No verified direct reference in this release
At2g46495 Putative RING-H2 finger protein ATL21A. No verified direct reference in this release
At1g28040 RING-H2 finger protein ATL20. No verified direct reference in this release
At2g46493 Putative RING-H2 finger protein ATL21C. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_026346 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0016567 protein ubiquitination Biological Process
GO:0005576 extracellular region Cellular Component
GO:0005634 nucleus Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0016020 membrane Cellular Component
GO:0008270 zinc ion binding Molecular Function
GO:0030247 polysaccharide binding Molecular Function
GO:0061630 ubiquitin protein ligase activity Molecular Function
KEGG gene cross-reference
ath:AT1G28040
ath:AT2G25410
ath:AT2G46493
ath:AT2G46494
ath:AT2G46495
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.751
Rank 1 · TkAUNG022730 · TK1151
Endoplasmic reticulum0.107
Rank 2 · TkAUNG022730 · TK1151
Cytoplasm0.100
Rank 3 · TkAUNG022730 · TK1151
Nucleus0.085
Rank 4 · TkAUNG022730 · TK1151
Extracellular0.052
Rank 5 · TkAUNG022730 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13947GUB_WAK_bind34-99 aa
PF17123zf-RING_11148-154 aa
PF14380WAK_assoc188-224 aa
PF12861zf-ANAPC11198-218 aa
PF13923zf-C3HC4_2201-205 aa
PF00097zf-C3HC4201-206 aa
PF13445zf-RING_UBOX201-205 aa
PF14447Prok-RING_4304-322 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkAUNG022730PF13947GUB_WAK_bind34992.4e-1763.8
TkAUNG022730PF17123zf-RING_111481543.4e-0936.9
TkAUNG022730PF14380WAK_assoc1882240.1213.8
TkAUNG022730PF12861zf-ANAPC111982186e-0523.7
TkAUNG022730PF13923zf-C3HC4_22012056.2e-0833.0
TkAUNG022730PF00097zf-C3HC42012062.5e-0731.2
TkAUNG022730PF13445zf-RING_UBOX2012053.3e-0524.5
TkAUNG022730PF14447Prok-RING_43043220.7310.5
TkAUNG022730PF12678zf-rbx13063574.4e-1143.6
TkAUNG022730PF12861zf-ANAPC113063596e-0523.7
TkAUNG022730PF13920zf-C3HC4_33123600.0001222.5
TkAUNG022730PF11789zf-Nse3123561.19.8
TkAUNG022730PF13639zf-RING_23133573.8e-1453.4
TkAUNG022730PF03854zf-P113133190.7710.2
TkAUNG022730PF15750UBZ_FAAP203143250.01915.5
TkAUNG022730PF17123zf-RING_113153433.4e-0936.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9SKK8Arabidopsis thalianasp|Q9SKK8|ATL22_ARATH RING-H2 finger protein ATL2233.700%Swiss-ProtMedium
P0CH02Arabidopsis thalianasp|P0CH02|AT21B_ARATH Putative RING-H2 finger protein ATL21B34.000%Swiss-ProtMedium
P0CH01Arabidopsis thalianasp|P0CH01|AT21A_ARATH Putative RING-H2 finger protein ATL21A33.100%Swiss-ProtMedium
Q9C7E9Arabidopsis thalianasp|Q9C7E9|ATL20_ARATH RING-H2 finger protein ATL2033.600%Swiss-ProtMedium
P0CH03Arabidopsis thalianasp|P0CH03|AT21C_ARATH Putative RING-H2 finger protein ATL21C31.200%Swiss-ProtMedium

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