TkA08G368450 | RubberDandelionOmics

Gene overview

TkA08G368450

Reference: TK1151 Chr: Chr08 Coordinates: 94365508-94365919 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

309 bp · TkA08G368450|TK1151|cDNA

ATGCGTACAACTCCTGAAGATCTGCTTAGGGGCAGCAAAGGGACTAAACTATCTTCACTCGAACAAATCCCTAGAAATCAACAACAAACTCCAGTTTTTACAGAAGGAGCAGGGTCAACTTTCTACATGGATCCCATTTACGATGAAATCGGTATTCTCCAAAAAGAGTATGATGTGTACTCATTTAGCGTGGTATTGTTTGAAATGTTAAGTGGGCGGTTGGCTTATCAATTAGGGAAGTCTGGCGATGGTAATCTAAA...

CDS

Download CDS FASTA

309 bp · TkA08G368450|TK1151|CDS

ATGCGTACAACTCCTGAAGATCTGCTTAGGGGCAGCAAAGGGACTAAACTATCTTCACTCGAACAAATCCCTAGAAATCAACAACAAACTCCAGTTTTTACAGAAGGAGCAGGGTCAACTTTCTACATGGATCCCATTTACGATGAAATCGGTATTCTCCAAAAAGAGTATGATGTGTACTCATTTAGCGTGGTATTGTTTGAAATGTTAAGTGGGCGGTTGGCTTATCAATTAGGGAAGTCTGGCGATGGTAATCTAAA...

Protein

Download Protein FASTA

102 aa · TkA08G368450|TK1151|PROTEIN

MRTTPEDLLRGSKGTKLSSLEQIPRNQQQTPVFTEGAGSTFYMDPIYDEIGILQKEYDVYSFSVVLFEMLSGRLAYQLGKSGDGNLKPLIYLVRRYNNDGFD

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA08G368450`
TK1151 ID	TkA08G368450
OH-1004 ID	LXL04_014556
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	57.300
Protein coverage (%)	TK1151 80.392 / OH-1004 12.873 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID	`TkA08G368450`
Location	Chr08:94365508-94365919 (-)
Description	Similar to HERK1: Receptor-like protein kinase HERK 1
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_014556` · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
GO annotations (OH1004 source)	GO:0006952 defense response Biological Process GO:0009741 response to brassinosteroid Biological Process GO:0009826 unidimensional cell growth Biological Process GO:0010183 pollen tube guidance Biological Process GO:0010483 pollen tube reception Biological Process GO:0005576 extracellular region Cellular Component GO:0005886 plasma membrane Cellular Component GO:0009506 plasmodesma Cellular Component GO:0009507 chloroplast Cellular Component GO:0043680 filiform apparatus Cellular Component GO:0004672 protein kinase activity Molecular Function GO:0004674 protein serine/threonine kinase activity Molecular Function
KEGG gene cross-reference	ath:AT2G07180 ath:AT3G46290 ath:AT5G59700 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.485

Rank 1 · TkA08G368450 · TK1151

Nucleus0.402

Rank 2 · TkA08G368450 · TK1151

Endoplasmic reticulum0.078

Rank 3 · TkA08G368450 · TK1151

Mitochondrion0.077

Rank 4 · TkA08G368450 · TK1151

Cell membrane0.067

Rank 5 · TkA08G368450 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00069Pkinase30-78 aa

PF07714PK_Tyr_Ser-Thr52-76 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA08G368450	`PF00069`	Pkinase	30	78	0.019	15.1
TkA08G368450	`PF07714`	PK_Tyr_Ser-Thr	52	76	0.069	13.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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